miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 68823 0.67 0.874793
Target:  5'- aGGUCGAGCUGCUgaaGUCGCagGUGCAcGUGc -3'
miRNA:   3'- -CCGGCUCGGUGG---CAGCGg-UAUGU-CAU- -5'
15691 3' -57.3 NC_004065.1 + 43634 0.67 0.874793
Target:  5'- uGGUCGGGCCGCCGauacgUCGUCGacuCGGa- -3'
miRNA:   3'- -CCGGCUCGGUGGC-----AGCGGUau-GUCau -5'
15691 3' -57.3 NC_004065.1 + 123521 0.67 0.881698
Target:  5'- gGGuCCGGGCUGgUGUgGUCGUACAGg- -3'
miRNA:   3'- -CC-GGCUCGGUgGCAgCGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 116395 0.67 0.881698
Target:  5'- cGGCCccGAGCCGCCGcaggaCGCCGacCAGc- -3'
miRNA:   3'- -CCGG--CUCGGUGGCa----GCGGUauGUCau -5'
15691 3' -57.3 NC_004065.1 + 113445 0.67 0.881698
Target:  5'- gGGC--AGCCGCUGUCGuCCAUGCGc-- -3'
miRNA:   3'- -CCGgcUCGGUGGCAGC-GGUAUGUcau -5'
15691 3' -57.3 NC_004065.1 + 103646 0.67 0.888395
Target:  5'- uGCgCGAGCagGCgGUCGCCGUGCGc-- -3'
miRNA:   3'- cCG-GCUCGg-UGgCAGCGGUAUGUcau -5'
15691 3' -57.3 NC_004065.1 + 134234 0.67 0.888395
Target:  5'- gGGCaCGGGCC-CCGgcCGCCgAUAUAGg- -3'
miRNA:   3'- -CCG-GCUCGGuGGCa-GCGG-UAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 115948 0.67 0.888395
Target:  5'- aGCCauggGAGUCgACaagGUCGCCGUGCAGUu -3'
miRNA:   3'- cCGG----CUCGG-UGg--CAGCGGUAUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 127083 0.67 0.8936
Target:  5'- cGGCacauCGAGCUuaggcagcagcuCCGUCGCCGUcCAGUu -3'
miRNA:   3'- -CCG----GCUCGGu-----------GGCAGCGGUAuGUCAu -5'
15691 3' -57.3 NC_004065.1 + 97020 0.67 0.89488
Target:  5'- cGGCCGcgauGCCgccuccGCCGUCGCCcUGCu--- -3'
miRNA:   3'- -CCGGCu---CGG------UGGCAGCGGuAUGucau -5'
15691 3' -57.3 NC_004065.1 + 173883 0.67 0.89488
Target:  5'- cGCCGugugugugGGCCGCCGcCGCCucaacacuCGGUAg -3'
miRNA:   3'- cCGGC--------UCGGUGGCaGCGGuau-----GUCAU- -5'
15691 3' -57.3 NC_004065.1 + 118421 0.67 0.89488
Target:  5'- aGCCGugacGGCCGCCGcCGCgGUcuCGGUGa -3'
miRNA:   3'- cCGGC----UCGGUGGCaGCGgUAu-GUCAU- -5'
15691 3' -57.3 NC_004065.1 + 109487 0.67 0.900533
Target:  5'- cGCCGcuaccGCCGCCGucucccgUCGCCGaGCAGg- -3'
miRNA:   3'- cCGGCu----CGGUGGC-------AGCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 83517 0.67 0.900533
Target:  5'- cGGUCGAGUacuucuuccccuaCGCCacccagacCGCCGUGCAGUAu -3'
miRNA:   3'- -CCGGCUCG-------------GUGGca------GCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 194805 0.67 0.90115
Target:  5'- cGUCGAGCCcCUGaaCGCCGUgGCGGUGg -3'
miRNA:   3'- cCGGCUCGGuGGCa-GCGGUA-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 109870 0.66 0.913033
Target:  5'- gGGCgGuGCCACCGgcgUCGCC--GCGGc- -3'
miRNA:   3'- -CCGgCuCGGUGGC---AGCGGuaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 36364 0.66 0.913033
Target:  5'- cGCCGgcagcGGCC-CCGUUGCCGccACGGUu -3'
miRNA:   3'- cCGGC-----UCGGuGGCAGCGGUa-UGUCAu -5'
15691 3' -57.3 NC_004065.1 + 151426 0.66 0.913033
Target:  5'- aGGaaGGGCgGCCGgcgCGCCAgcucGCGGUc -3'
miRNA:   3'- -CCggCUCGgUGGCa--GCGGUa---UGUCAu -5'
15691 3' -57.3 NC_004065.1 + 70295 0.66 0.913033
Target:  5'- uGGCCGucuCCACCGUgacgagcgaCGCCA-GCAGg- -3'
miRNA:   3'- -CCGGCuc-GGUGGCA---------GCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 56970 0.66 0.913033
Target:  5'- uGCUGccGCCGCCGcCGCCGcUGCGGc- -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGU-AUGUCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.