Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 86988 | 0.68 | 0.852879 |
Target: 5'- gGGCCGAGgCGgCGUCggggGCCGggGCAGg- -3' miRNA: 3'- -CCGGCUCgGUgGCAG----CGGUa-UGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 19823 | 0.68 | 0.852879 |
Target: 5'- aGCCGAcGCUACCGcCGCCAccgACAc-- -3' miRNA: 3'- cCGGCU-CGGUGGCaGCGGUa--UGUcau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 39269 | 0.68 | 0.845191 |
Target: 5'- aGGCC--GCCACCGUCcCCAU-CAGa- -3' miRNA: 3'- -CCGGcuCGGUGGCAGcGGUAuGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 229157 | 0.68 | 0.845191 |
Target: 5'- cGGCgGGG-CGCCcUCGCCcgGCAGUc -3' miRNA: 3'- -CCGgCUCgGUGGcAGCGGuaUGUCAu -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 99378 | 0.68 | 0.837323 |
Target: 5'- cGGCCGcaCCugCGUUGCCGUcaaACGGg- -3' miRNA: 3'- -CCGGCucGGugGCAGCGGUA---UGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 84827 | 0.68 | 0.837323 |
Target: 5'- gGGCCgGAGUuuuCACCGUCGUaaaACGGUGa -3' miRNA: 3'- -CCGG-CUCG---GUGGCAGCGguaUGUCAU- -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 103759 | 0.68 | 0.837323 |
Target: 5'- cGGCgGGGCCuccggACCGUCGCgCA-GCAGc- -3' miRNA: 3'- -CCGgCUCGG-----UGGCAGCG-GUaUGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 163739 | 0.68 | 0.82928 |
Target: 5'- aGCCGccGCCACCGgCGCCGccgACGGa- -3' miRNA: 3'- cCGGCu-CGGUGGCaGCGGUa--UGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 30225 | 0.68 | 0.82928 |
Target: 5'- uGCCGccGCCGCCGcCGCCAgcacCGGUc -3' miRNA: 3'- cCGGCu-CGGUGGCaGCGGUau--GUCAu -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 164354 | 0.68 | 0.82928 |
Target: 5'- cGGUCucGGUUACCGUCGCCGUACc--- -3' miRNA: 3'- -CCGGc-UCGGUGGCAGCGGUAUGucau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 125871 | 0.68 | 0.826833 |
Target: 5'- cGGCCGuGuCCACCaGUuugaucuuguucucCGCCGUGCuGUAg -3' miRNA: 3'- -CCGGCuC-GGUGG-CA--------------GCGGUAUGuCAU- -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 57767 | 0.68 | 0.821068 |
Target: 5'- cGUCGccGCCGCCGUCGCUcu-CGGUGg -3' miRNA: 3'- cCGGCu-CGGUGGCAGCGGuauGUCAU- -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 138392 | 0.68 | 0.821068 |
Target: 5'- cGCCG-GCCGCUGUaGCCAUGCu--- -3' miRNA: 3'- cCGGCuCGGUGGCAgCGGUAUGucau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 56372 | 0.69 | 0.812696 |
Target: 5'- aGGCgaGcGCCGCCGUCGuCCGggACGGUc -3' miRNA: 3'- -CCGg-CuCGGUGGCAGC-GGUa-UGUCAu -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 115160 | 0.69 | 0.812695 |
Target: 5'- cGGCCGGcGgCACCGUCGUCGc-CAGg- -3' miRNA: 3'- -CCGGCU-CgGUGGCAGCGGUauGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 109921 | 0.69 | 0.80417 |
Target: 5'- cGCCGcGGCCGCCGUCGCguccCGGg- -3' miRNA: 3'- cCGGC-UCGGUGGCAGCGguauGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 126160 | 0.69 | 0.795498 |
Target: 5'- uGCCGAGCgGCCGg-GCC-UACAGc- -3' miRNA: 3'- cCGGCUCGgUGGCagCGGuAUGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 127523 | 0.69 | 0.795497 |
Target: 5'- uGCCGccugcucaugGGCC-CCGUCGCCGUGCc--- -3' miRNA: 3'- cCGGC----------UCGGuGGCAGCGGUAUGucau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 168824 | 0.69 | 0.786687 |
Target: 5'- gGGCCGAGacgcCCGCUGUCGCCGc------ -3' miRNA: 3'- -CCGGCUC----GGUGGCAGCGGUaugucau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 147643 | 0.69 | 0.777747 |
Target: 5'- cGGgCGAGaucgaCugCGUCGCCAUcaaGCAGg- -3' miRNA: 3'- -CCgGCUCg----GugGCAGCGGUA---UGUCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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