miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 19823 0.68 0.852879
Target:  5'- aGCCGAcGCUACCGcCGCCAccgACAc-- -3'
miRNA:   3'- cCGGCU-CGGUGGCaGCGGUa--UGUcau -5'
15691 3' -57.3 NC_004065.1 + 20983 0.71 0.712206
Target:  5'- cGCCGugaucGCCGUCGUCGCCGU-CGGUGc -3'
miRNA:   3'- cCGGCu----CGGUGGCAGCGGUAuGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 21958 0.72 0.603917
Target:  5'- cGGCCaGGGCCGUCGUCGgCAggACGGUGa -3'
miRNA:   3'- -CCGG-CUCGGUGGCAGCgGUa-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 22802 0.71 0.682991
Target:  5'- -aCCG-GCCACCGUCGCUAUcuUAGUGc -3'
miRNA:   3'- ccGGCuCGGUGGCAGCGGUAu-GUCAU- -5'
15691 3' -57.3 NC_004065.1 + 25111 0.71 0.682991
Target:  5'- cGUCGAgGCCGCCGUCGCCGccaacauCGGg- -3'
miRNA:   3'- cCGGCU-CGGUGGCAGCGGUau-----GUCau -5'
15691 3' -57.3 NC_004065.1 + 25595 0.71 0.712205
Target:  5'- cGGCUGAGCagcagGCCGaUCucgauggggccuGCCGUGCAGUGa -3'
miRNA:   3'- -CCGGCUCGg----UGGC-AG------------CGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 26261 0.66 0.924029
Target:  5'- cGCCGAgGCCACgGUCaGCgaCGUGCuGUAc -3'
miRNA:   3'- cCGGCU-CGGUGgCAG-CG--GUAUGuCAU- -5'
15691 3' -57.3 NC_004065.1 + 27053 0.66 0.918643
Target:  5'- gGGCUcgGAGCgACUGUCaucacGCCGUAguGUGa -3'
miRNA:   3'- -CCGG--CUCGgUGGCAG-----CGGUAUguCAU- -5'
15691 3' -57.3 NC_004065.1 + 30009 0.66 0.918643
Target:  5'- aGGCUGcGCgACCGUCaCCGgcGCGGUGg -3'
miRNA:   3'- -CCGGCuCGgUGGCAGcGGUa-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 30225 0.68 0.82928
Target:  5'- uGCCGccGCCGCCGcCGCCAgcacCGGUc -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGUau--GUCAu -5'
15691 3' -57.3 NC_004065.1 + 33683 0.8 0.258289
Target:  5'- aGGCCGAGCgAUCGUaGCCGUACAGc- -3'
miRNA:   3'- -CCGGCUCGgUGGCAgCGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 33976 1.08 0.003798
Target:  5'- gGGCCGAGCCACCGUCGCCAUACAGUAc -3'
miRNA:   3'- -CCGGCUCGGUGGCAGCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 35883 0.66 0.918092
Target:  5'- cGCCGAugacauccccgccGCCGCCGcCGCCGUGgAu-- -3'
miRNA:   3'- cCGGCU-------------CGGUGGCaGCGGUAUgUcau -5'
15691 3' -57.3 NC_004065.1 + 36183 0.72 0.613806
Target:  5'- cGGCCgcgacaGAGCaccgaACgGUCGCCAUGCGGg- -3'
miRNA:   3'- -CCGG------CUCGg----UGgCAGCGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 36364 0.66 0.913033
Target:  5'- cGCCGgcagcGGCC-CCGUUGCCGccACGGUu -3'
miRNA:   3'- cCGGC-----UCGGuGGCAGCGGUa-UGUCAu -5'
15691 3' -57.3 NC_004065.1 + 37221 0.73 0.564621
Target:  5'- cGCCcaGAcGCCGCCGUCuCCAUGCAGg- -3'
miRNA:   3'- cCGG--CU-CGGUGGCAGcGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 39269 0.68 0.845191
Target:  5'- aGGCC--GCCACCGUCcCCAU-CAGa- -3'
miRNA:   3'- -CCGGcuCGGUGGCAGcGGUAuGUCau -5'
15691 3' -57.3 NC_004065.1 + 40012 0.66 0.918092
Target:  5'- cGGaCCGAGCCGCUgcggaaaGUCGCCuucguCGGc- -3'
miRNA:   3'- -CC-GGCUCGGUGG-------CAGCGGuau--GUCau -5'
15691 3' -57.3 NC_004065.1 + 42454 0.74 0.507102
Target:  5'- aGCCGAGaCGCgGUCGCCAUGCuGg- -3'
miRNA:   3'- cCGGCUCgGUGgCAGCGGUAUGuCau -5'
15691 3' -57.3 NC_004065.1 + 43634 0.67 0.874793
Target:  5'- uGGUCGGGCCGCCGauacgUCGUCGacuCGGa- -3'
miRNA:   3'- -CCGGCUCGGUGGC-----AGCGGUau-GUCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.