Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15691 | 3' | -57.3 | NC_004065.1 | + | 48356 | 0.7 | 0.721827 |
Target: 5'- cGCCGccGCCACCGcCGCCGccACAGg- -3' miRNA: 3'- cCGGCu-CGGUGGCaGCGGUa-UGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 52784 | 0.65 | 0.932671 |
Target: 5'- cGGCgGGGCCGCCGggggucaguaucccUUGCCu--CGGUu -3' miRNA: 3'- -CCGgCUCGGUGGC--------------AGCGGuauGUCAu -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 56372 | 0.69 | 0.812696 |
Target: 5'- aGGCgaGcGCCGCCGUCGuCCGggACGGUc -3' miRNA: 3'- -CCGg-CuCGGUGGCAGC-GGUa-UGUCAu -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 56970 | 0.66 | 0.913033 |
Target: 5'- uGCUGccGCCGCCGcCGCCGcUGCGGc- -3' miRNA: 3'- cCGGCu-CGGUGGCaGCGGU-AUGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 57767 | 0.68 | 0.821068 |
Target: 5'- cGUCGccGCCGCCGUCGCUcu-CGGUGg -3' miRNA: 3'- cCGGCu-CGGUGGCAGCGGuauGUCAU- -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 61075 | 0.68 | 0.860378 |
Target: 5'- aGGCCGuuGGUCACCauGUCGCagauguCGUGCAGg- -3' miRNA: 3'- -CCGGC--UCGGUGG--CAGCG------GUAUGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 62721 | 0.67 | 0.867685 |
Target: 5'- cGGCCGcuCCuGCCGUCGCCgGUGCu--- -3' miRNA: 3'- -CCGGCucGG-UGGCAGCGG-UAUGucau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 68823 | 0.67 | 0.874793 |
Target: 5'- aGGUCGAGCUGCUgaaGUCGCagGUGCAcGUGc -3' miRNA: 3'- -CCGGCUCGGUGG---CAGCGg-UAUGU-CAU- -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 70295 | 0.66 | 0.913033 |
Target: 5'- uGGCCGucuCCACCGUgacgagcgaCGCCA-GCAGg- -3' miRNA: 3'- -CCGGCuc-GGUGGCA---------GCGGUaUGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 83517 | 0.67 | 0.900533 |
Target: 5'- cGGUCGAGUacuucuuccccuaCGCCacccagacCGCCGUGCAGUAu -3' miRNA: 3'- -CCGGCUCG-------------GUGGca------GCGGUAUGUCAU- -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 84827 | 0.68 | 0.837323 |
Target: 5'- gGGCCgGAGUuuuCACCGUCGUaaaACGGUGa -3' miRNA: 3'- -CCGG-CUCG---GUGGCAGCGguaUGUCAU- -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 86988 | 0.68 | 0.852879 |
Target: 5'- gGGCCGAGgCGgCGUCggggGCCGggGCAGg- -3' miRNA: 3'- -CCGGCUCgGUgGCAG----CGGUa-UGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 88405 | 0.73 | 0.584204 |
Target: 5'- cGCCGAGCCGCCacCGCCGgcaGCGGa- -3' miRNA: 3'- cCGGCUCGGUGGcaGCGGUa--UGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 90380 | 0.66 | 0.929191 |
Target: 5'- uGGCCGcggGGCCuccgGCCGgcggCGCCA-GCGGg- -3' miRNA: 3'- -CCGGC---UCGG----UGGCa---GCGGUaUGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 91185 | 0.66 | 0.929191 |
Target: 5'- cGGCCGcGGaagCGCCGUCGgCGUGCGc-- -3' miRNA: 3'- -CCGGC-UCg--GUGGCAGCgGUAUGUcau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 91437 | 0.66 | 0.918643 |
Target: 5'- cGCCGAcggcgcuuccGCgGCCGUCGCC-UGCGa-- -3' miRNA: 3'- cCGGCU----------CGgUGGCAGCGGuAUGUcau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 97020 | 0.67 | 0.89488 |
Target: 5'- cGGCCGcgauGCCgccuccGCCGUCGCCcUGCu--- -3' miRNA: 3'- -CCGGCu---CGG------UGGCAGCGGuAUGucau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 99378 | 0.68 | 0.837323 |
Target: 5'- cGGCCGcaCCugCGUUGCCGUcaaACGGg- -3' miRNA: 3'- -CCGGCucGGugGCAGCGGUA---UGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 100004 | 0.79 | 0.29616 |
Target: 5'- cGUCGuAGCCGCCGcCGCCGUACAGc- -3' miRNA: 3'- cCGGC-UCGGUGGCaGCGGUAUGUCau -5' |
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15691 | 3' | -57.3 | NC_004065.1 | + | 103646 | 0.67 | 0.888395 |
Target: 5'- uGCgCGAGCagGCgGUCGCCGUGCGc-- -3' miRNA: 3'- cCG-GCUCGg-UGgCAGCGGUAUGUcau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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