miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 127083 0.67 0.8936
Target:  5'- cGGCacauCGAGCUuaggcagcagcuCCGUCGCCGUcCAGUu -3'
miRNA:   3'- -CCG----GCUCGGu-----------GGCAGCGGUAuGUCAu -5'
15691 3' -57.3 NC_004065.1 + 127385 0.66 0.924029
Target:  5'- cGCCGGuagcGCCGCCGcCGCgAUGgGGg- -3'
miRNA:   3'- cCGGCU----CGGUGGCaGCGgUAUgUCau -5'
15691 3' -57.3 NC_004065.1 + 127523 0.69 0.795497
Target:  5'- uGCCGccugcucaugGGCC-CCGUCGCCGUGCc--- -3'
miRNA:   3'- cCGGC----------UCGGuGGCAGCGGUAUGucau -5'
15691 3' -57.3 NC_004065.1 + 134234 0.67 0.888395
Target:  5'- gGGCaCGGGCC-CCGgcCGCCgAUAUAGg- -3'
miRNA:   3'- -CCG-GCUCGGuGGCa-GCGG-UAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 136552 0.73 0.584204
Target:  5'- aGGCC--GCCACCGUCaCUAUGCAGg- -3'
miRNA:   3'- -CCGGcuCGGUGGCAGcGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 138392 0.68 0.821068
Target:  5'- cGCCG-GCCGCUGUaGCCAUGCu--- -3'
miRNA:   3'- cCGGCuCGGUGGCAgCGGUAUGucau -5'
15691 3' -57.3 NC_004065.1 + 138819 0.7 0.750225
Target:  5'- aGCgGAcGgCACCGUCGCCGU-CAGUc -3'
miRNA:   3'- cCGgCU-CgGUGGCAGCGGUAuGUCAu -5'
15691 3' -57.3 NC_004065.1 + 147643 0.69 0.777747
Target:  5'- cGGgCGAGaucgaCugCGUCGCCAUcaaGCAGg- -3'
miRNA:   3'- -CCgGCUCg----GugGCAGCGGUA---UGUCau -5'
15691 3' -57.3 NC_004065.1 + 149240 0.71 0.682991
Target:  5'- cGCCGccGCCGCCGUCGCC-UGCu--- -3'
miRNA:   3'- cCGGCu-CGGUGGCAGCGGuAUGucau -5'
15691 3' -57.3 NC_004065.1 + 151167 0.7 0.750225
Target:  5'- cGCCgGAGCCGCCGUCGgaccccuuguuCCcgACGGa- -3'
miRNA:   3'- cCGG-CUCGGUGGCAGC-----------GGuaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 151426 0.66 0.913033
Target:  5'- aGGaaGGGCgGCCGgcgCGCCAgcucGCGGUc -3'
miRNA:   3'- -CCggCUCGgUGGCa--GCGGUa---UGUCAu -5'
15691 3' -57.3 NC_004065.1 + 154176 0.69 0.768684
Target:  5'- cGGCUGuugcuGGCuCGCCGUCGCCAUcucGCAu-- -3'
miRNA:   3'- -CCGGC-----UCG-GUGGCAGCGGUA---UGUcau -5'
15691 3' -57.3 NC_004065.1 + 159683 0.67 0.874793
Target:  5'- -cCCGAggcgcuccucGCCGCCGUCGCCGccgAUAGa- -3'
miRNA:   3'- ccGGCU----------CGGUGGCAGCGGUa--UGUCau -5'
15691 3' -57.3 NC_004065.1 + 162389 0.73 0.564621
Target:  5'- cGCuCGAcGCCACCGgcaucucgaaCGCCGUACGGUGc -3'
miRNA:   3'- cCG-GCU-CGGUGGCa---------GCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 162522 0.68 0.860378
Target:  5'- cGCaCGAGCCGCCGg-GCCAggucucggACGGg- -3'
miRNA:   3'- cCG-GCUCGGUGGCagCGGUa-------UGUCau -5'
15691 3' -57.3 NC_004065.1 + 163431 0.76 0.434654
Target:  5'- cGCCGcGGUgGCCGcCGCCGUGCAGUc -3'
miRNA:   3'- cCGGC-UCGgUGGCaGCGGUAUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 163739 0.68 0.82928
Target:  5'- aGCCGccGCCACCGgCGCCGccgACGGa- -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGUa--UGUCau -5'
15691 3' -57.3 NC_004065.1 + 164354 0.68 0.82928
Target:  5'- cGGUCucGGUUACCGUCGCCGUACc--- -3'
miRNA:   3'- -CCGGc-UCGGUGGCAGCGGUAUGucau -5'
15691 3' -57.3 NC_004065.1 + 165890 0.74 0.51653
Target:  5'- aGGCCGcacgcGCUGCCGUCGUgGUACGGa- -3'
miRNA:   3'- -CCGGCu----CGGUGGCAGCGgUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 168824 0.69 0.786687
Target:  5'- gGGCCGAGacgcCCGCUGUCGCCGc------ -3'
miRNA:   3'- -CCGGCUC----GGUGGCAGCGGUaugucau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.