miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 229157 0.68 0.845191
Target:  5'- cGGCgGGG-CGCCcUCGCCcgGCAGUc -3'
miRNA:   3'- -CCGgCUCgGUGGcAGCGGuaUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 201335 0.72 0.653422
Target:  5'- aGCCGccGCCuCCGUCGCCGgagGCGGg- -3'
miRNA:   3'- cCGGCu-CGGuGGCAGCGGUa--UGUCau -5'
15691 3' -57.3 NC_004065.1 + 201047 0.67 0.867685
Target:  5'- cGCCGAGaCGCCGUCGCCc------- -3'
miRNA:   3'- cCGGCUCgGUGGCAGCGGuaugucau -5'
15691 3' -57.3 NC_004065.1 + 198372 0.66 0.924029
Target:  5'- gGGCCuGAcGCgGCgCGUCGCCG-ACAGc- -3'
miRNA:   3'- -CCGG-CU-CGgUG-GCAGCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 195432 0.73 0.554893
Target:  5'- cGCCGcGUCGCCGUCGUCGgACAGg- -3'
miRNA:   3'- cCGGCuCGGUGGCAGCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 195392 0.67 0.867685
Target:  5'- cGGCCGAGgucuuCCACgGcgaGCCGUACAcGUAc -3'
miRNA:   3'- -CCGGCUC-----GGUGgCag-CGGUAUGU-CAU- -5'
15691 3' -57.3 NC_004065.1 + 194805 0.67 0.90115
Target:  5'- cGUCGAGCCcCUGaaCGCCGUgGCGGUGg -3'
miRNA:   3'- cCGGCUCGGuGGCa-GCGGUA-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 188226 0.66 0.918643
Target:  5'- cGGCCGcAGCUgcacccucucccGCUGUaCGCgGUACAGa- -3'
miRNA:   3'- -CCGGC-UCGG------------UGGCA-GCGgUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 186240 0.76 0.416642
Target:  5'- gGGuCCGAGCCgaagugcaauccaGCUugaagGUCGCCAUGCAGUGg -3'
miRNA:   3'- -CC-GGCUCGG-------------UGG-----CAGCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 176431 0.73 0.553923
Target:  5'- uGCCuccGCCGCCGUCGCCAUcgucucaGCAGa- -3'
miRNA:   3'- cCGGcu-CGGUGGCAGCGGUA-------UGUCau -5'
15691 3' -57.3 NC_004065.1 + 173883 0.67 0.89488
Target:  5'- cGCCGugugugugGGCCGCCGcCGCCucaacacuCGGUAg -3'
miRNA:   3'- cCGGC--------UCGGUGGCaGCGGuau-----GUCAU- -5'
15691 3' -57.3 NC_004065.1 + 170257 0.73 0.594048
Target:  5'- uGGCCGuGGCCGCCGcCGCCAccauCGGc- -3'
miRNA:   3'- -CCGGC-UCGGUGGCaGCGGUau--GUCau -5'
15691 3' -57.3 NC_004065.1 + 168824 0.69 0.786687
Target:  5'- gGGCCGAGacgcCCGCUGUCGCCGc------ -3'
miRNA:   3'- -CCGGCUC----GGUGGCAGCGGUaugucau -5'
15691 3' -57.3 NC_004065.1 + 165890 0.74 0.51653
Target:  5'- aGGCCGcacgcGCUGCCGUCGUgGUACGGa- -3'
miRNA:   3'- -CCGGCu----CGGUGGCAGCGgUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 164354 0.68 0.82928
Target:  5'- cGGUCucGGUUACCGUCGCCGUACc--- -3'
miRNA:   3'- -CCGGc-UCGGUGGCAGCGGUAUGucau -5'
15691 3' -57.3 NC_004065.1 + 163739 0.68 0.82928
Target:  5'- aGCCGccGCCACCGgCGCCGccgACGGa- -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGUa--UGUCau -5'
15691 3' -57.3 NC_004065.1 + 163431 0.76 0.434654
Target:  5'- cGCCGcGGUgGCCGcCGCCGUGCAGUc -3'
miRNA:   3'- cCGGC-UCGgUGGCaGCGGUAUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 162522 0.68 0.860378
Target:  5'- cGCaCGAGCCGCCGg-GCCAggucucggACGGg- -3'
miRNA:   3'- cCG-GCUCGGUGGCagCGGUa-------UGUCau -5'
15691 3' -57.3 NC_004065.1 + 162389 0.73 0.564621
Target:  5'- cGCuCGAcGCCACCGgcaucucgaaCGCCGUACGGUGc -3'
miRNA:   3'- cCG-GCU-CGGUGGCa---------GCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 159683 0.67 0.874793
Target:  5'- -cCCGAggcgcuccucGCCGCCGUCGCCGccgAUAGa- -3'
miRNA:   3'- ccGGCU----------CGGUGGCAGCGGUa--UGUCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.