miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 86988 0.68 0.852879
Target:  5'- gGGCCGAGgCGgCGUCggggGCCGggGCAGg- -3'
miRNA:   3'- -CCGGCUCgGUgGCAG----CGGUa-UGUCau -5'
15691 3' -57.3 NC_004065.1 + 84827 0.68 0.837323
Target:  5'- gGGCCgGAGUuuuCACCGUCGUaaaACGGUGa -3'
miRNA:   3'- -CCGG-CUCG---GUGGCAGCGguaUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 83517 0.67 0.900533
Target:  5'- cGGUCGAGUacuucuuccccuaCGCCacccagacCGCCGUGCAGUAu -3'
miRNA:   3'- -CCGGCUCG-------------GUGGca------GCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 70295 0.66 0.913033
Target:  5'- uGGCCGucuCCACCGUgacgagcgaCGCCA-GCAGg- -3'
miRNA:   3'- -CCGGCuc-GGUGGCA---------GCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 68823 0.67 0.874793
Target:  5'- aGGUCGAGCUGCUgaaGUCGCagGUGCAcGUGc -3'
miRNA:   3'- -CCGGCUCGGUGG---CAGCGg-UAUGU-CAU- -5'
15691 3' -57.3 NC_004065.1 + 62721 0.67 0.867685
Target:  5'- cGGCCGcuCCuGCCGUCGCCgGUGCu--- -3'
miRNA:   3'- -CCGGCucGG-UGGCAGCGG-UAUGucau -5'
15691 3' -57.3 NC_004065.1 + 61075 0.68 0.860378
Target:  5'- aGGCCGuuGGUCACCauGUCGCagauguCGUGCAGg- -3'
miRNA:   3'- -CCGGC--UCGGUGG--CAGCG------GUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 57767 0.68 0.821068
Target:  5'- cGUCGccGCCGCCGUCGCUcu-CGGUGg -3'
miRNA:   3'- cCGGCu-CGGUGGCAGCGGuauGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 56970 0.66 0.913033
Target:  5'- uGCUGccGCCGCCGcCGCCGcUGCGGc- -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGU-AUGUCau -5'
15691 3' -57.3 NC_004065.1 + 56372 0.69 0.812696
Target:  5'- aGGCgaGcGCCGCCGUCGuCCGggACGGUc -3'
miRNA:   3'- -CCGg-CuCGGUGGCAGC-GGUa-UGUCAu -5'
15691 3' -57.3 NC_004065.1 + 52784 0.65 0.932671
Target:  5'- cGGCgGGGCCGCCGggggucaguaucccUUGCCu--CGGUu -3'
miRNA:   3'- -CCGgCUCGGUGGC--------------AGCGGuauGUCAu -5'
15691 3' -57.3 NC_004065.1 + 48356 0.7 0.721827
Target:  5'- cGCCGccGCCACCGcCGCCGccACAGg- -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGUa-UGUCau -5'
15691 3' -57.3 NC_004065.1 + 43634 0.67 0.874793
Target:  5'- uGGUCGGGCCGCCGauacgUCGUCGacuCGGa- -3'
miRNA:   3'- -CCGGCUCGGUGGC-----AGCGGUau-GUCau -5'
15691 3' -57.3 NC_004065.1 + 42454 0.74 0.507102
Target:  5'- aGCCGAGaCGCgGUCGCCAUGCuGg- -3'
miRNA:   3'- cCGGCUCgGUGgCAGCGGUAUGuCau -5'
15691 3' -57.3 NC_004065.1 + 40012 0.66 0.918092
Target:  5'- cGGaCCGAGCCGCUgcggaaaGUCGCCuucguCGGc- -3'
miRNA:   3'- -CC-GGCUCGGUGG-------CAGCGGuau--GUCau -5'
15691 3' -57.3 NC_004065.1 + 39269 0.68 0.845191
Target:  5'- aGGCC--GCCACCGUCcCCAU-CAGa- -3'
miRNA:   3'- -CCGGcuCGGUGGCAGcGGUAuGUCau -5'
15691 3' -57.3 NC_004065.1 + 37221 0.73 0.564621
Target:  5'- cGCCcaGAcGCCGCCGUCuCCAUGCAGg- -3'
miRNA:   3'- cCGG--CU-CGGUGGCAGcGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 36364 0.66 0.913033
Target:  5'- cGCCGgcagcGGCC-CCGUUGCCGccACGGUu -3'
miRNA:   3'- cCGGC-----UCGGuGGCAGCGGUa-UGUCAu -5'
15691 3' -57.3 NC_004065.1 + 36183 0.72 0.613806
Target:  5'- cGGCCgcgacaGAGCaccgaACgGUCGCCAUGCGGg- -3'
miRNA:   3'- -CCGG------CUCGg----UGgCAGCGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 35883 0.66 0.918092
Target:  5'- cGCCGAugacauccccgccGCCGCCGcCGCCGUGgAu-- -3'
miRNA:   3'- cCGGCU-------------CGGUGGCaGCGGUAUgUcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.