miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 127523 0.69 0.795497
Target:  5'- uGCCGccugcucaugGGCC-CCGUCGCCGUGCc--- -3'
miRNA:   3'- cCGGC----------UCGGuGGCAGCGGUAUGucau -5'
15691 3' -57.3 NC_004065.1 + 170257 0.73 0.594048
Target:  5'- uGGCCGuGGCCGCCGcCGCCAccauCGGc- -3'
miRNA:   3'- -CCGGC-UCGGUGGCaGCGGUau--GUCau -5'
15691 3' -57.3 NC_004065.1 + 21958 0.72 0.603917
Target:  5'- cGGCCaGGGCCGUCGUCGgCAggACGGUGa -3'
miRNA:   3'- -CCGG-CUCGGUGGCAGCgGUa-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 22802 0.71 0.682991
Target:  5'- -aCCG-GCCACCGUCGCUAUcuUAGUGc -3'
miRNA:   3'- ccGGCuCGGUGGCAGCGGUAu-GUCAU- -5'
15691 3' -57.3 NC_004065.1 + 149240 0.71 0.682991
Target:  5'- cGCCGccGCCGCCGUCGCC-UGCu--- -3'
miRNA:   3'- cCGGCu-CGGUGGCAGCGGuAUGucau -5'
15691 3' -57.3 NC_004065.1 + 25595 0.71 0.712205
Target:  5'- cGGCUGAGCagcagGCCGaUCucgauggggccuGCCGUGCAGUGa -3'
miRNA:   3'- -CCGGCUCGg----UGGC-AG------------CGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 116095 0.7 0.759507
Target:  5'- cGGCCGAGCuCAUCcggcgaggggugGUCGCCGga-GGUAg -3'
miRNA:   3'- -CCGGCUCG-GUGG------------CAGCGGUaugUCAU- -5'
15691 3' -57.3 NC_004065.1 + 154176 0.69 0.768684
Target:  5'- cGGCUGuugcuGGCuCGCCGUCGCCAUcucGCAu-- -3'
miRNA:   3'- -CCGGC-----UCG-GUGGCAGCGGUA---UGUcau -5'
15691 3' -57.3 NC_004065.1 + 147643 0.69 0.777747
Target:  5'- cGGgCGAGaucgaCugCGUCGCCAUcaaGCAGg- -3'
miRNA:   3'- -CCgGCUCg----GugGCAGCGGUA---UGUCau -5'
15691 3' -57.3 NC_004065.1 + 88405 0.73 0.584204
Target:  5'- cGCCGAGCCGCCacCGCCGgcaGCGGa- -3'
miRNA:   3'- cCGGCUCGGUGGcaGCGGUa--UGUCau -5'
15691 3' -57.3 NC_004065.1 + 136552 0.73 0.584204
Target:  5'- aGGCC--GCCACCGUCaCUAUGCAGg- -3'
miRNA:   3'- -CCGGcuCGGUGGCAGcGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 126900 0.73 0.574394
Target:  5'- cGCgUGAGCCGCCGUCGCCA-ACGc-- -3'
miRNA:   3'- cCG-GCUCGGUGGCAGCGGUaUGUcau -5'
15691 3' -57.3 NC_004065.1 + 100004 0.79 0.29616
Target:  5'- cGUCGuAGCCGCCGcCGCCGUACAGc- -3'
miRNA:   3'- cCGGC-UCGGUGGCaGCGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 163431 0.76 0.434654
Target:  5'- cGCCGcGGUgGCCGcCGCCGUGCAGUc -3'
miRNA:   3'- cCGGC-UCGgUGGCaGCGGUAUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 110847 0.75 0.461148
Target:  5'- gGGCgCGGGCCgcccgcgucgaACCGUCGCCAUGCcGa- -3'
miRNA:   3'- -CCG-GCUCGG-----------UGGCAGCGGUAUGuCau -5'
15691 3' -57.3 NC_004065.1 + 42454 0.74 0.507102
Target:  5'- aGCCGAGaCGCgGUCGCCAUGCuGg- -3'
miRNA:   3'- cCGGCUCgGUGgCAGCGGUAUGuCau -5'
15691 3' -57.3 NC_004065.1 + 165890 0.74 0.51653
Target:  5'- aGGCCGcacgcGCUGCCGUCGUgGUACGGa- -3'
miRNA:   3'- -CCGGCu----CGGUGGCAGCGgUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 195432 0.73 0.554893
Target:  5'- cGCCGcGUCGCCGUCGUCGgACAGg- -3'
miRNA:   3'- cCGGCuCGGUGGCAGCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 162389 0.73 0.564621
Target:  5'- cGCuCGAcGCCACCGgcaucucgaaCGCCGUACGGUGc -3'
miRNA:   3'- cCG-GCU-CGGUGGCa---------GCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 37221 0.73 0.564621
Target:  5'- cGCCcaGAcGCCGCCGUCuCCAUGCAGg- -3'
miRNA:   3'- cCGG--CU-CGGUGGCAGcGGUAUGUCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.