miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 33976 1.08 0.003798
Target:  5'- gGGCCGAGCCACCGUCGCCAUACAGUAc -3'
miRNA:   3'- -CCGGCUCGGUGGCAGCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 163739 0.68 0.82928
Target:  5'- aGCCGccGCCACCGgCGCCGccgACGGa- -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGUa--UGUCau -5'
15691 3' -57.3 NC_004065.1 + 30225 0.68 0.82928
Target:  5'- uGCCGccGCCGCCGcCGCCAgcacCGGUc -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGUau--GUCAu -5'
15691 3' -57.3 NC_004065.1 + 52784 0.65 0.932671
Target:  5'- cGGCgGGGCCGCCGggggucaguaucccUUGCCu--CGGUu -3'
miRNA:   3'- -CCGgCUCGGUGGC--------------AGCGGuauGUCAu -5'
15691 3' -57.3 NC_004065.1 + 125078 0.73 0.583222
Target:  5'- aGGCgGAGCCGCUGUucguggaCGCCcgGCGGa- -3'
miRNA:   3'- -CCGgCUCGGUGGCA-------GCGGuaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 36183 0.72 0.613806
Target:  5'- cGGCCgcgacaGAGCaccgaACgGUCGCCAUGCGGg- -3'
miRNA:   3'- -CCGG------CUCGg----UGgCAGCGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 25111 0.71 0.682991
Target:  5'- cGUCGAgGCCGCCGUCGCCGccaacauCGGg- -3'
miRNA:   3'- cCGGCU-CGGUGGCAGCGGUau-----GUCau -5'
15691 3' -57.3 NC_004065.1 + 20983 0.71 0.712206
Target:  5'- cGCCGugaucGCCGUCGUCGCCGU-CGGUGc -3'
miRNA:   3'- cCGGCu----CGGUGGCAGCGGUAuGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 138819 0.7 0.750225
Target:  5'- aGCgGAcGgCACCGUCGCCGU-CAGUc -3'
miRNA:   3'- cCGgCU-CgGUGGCAGCGGUAuGUCAu -5'
15691 3' -57.3 NC_004065.1 + 138392 0.68 0.821068
Target:  5'- cGCCG-GCCGCUGUaGCCAUGCu--- -3'
miRNA:   3'- cCGGCuCGGUGGCAgCGGUAUGucau -5'
15691 3' -57.3 NC_004065.1 + 168824 0.69 0.786687
Target:  5'- gGGCCGAGacgcCCGCUGUCGCCGc------ -3'
miRNA:   3'- -CCGGCUC----GGUGGCAGCGGUaugucau -5'
15691 3' -57.3 NC_004065.1 + 109448 0.7 0.740845
Target:  5'- aGGCCGAGgCGCCGcCGCCGg------ -3'
miRNA:   3'- -CCGGCUCgGUGGCaGCGGUaugucau -5'
15691 3' -57.3 NC_004065.1 + 186240 0.76 0.416642
Target:  5'- gGGuCCGAGCCgaagugcaauccaGCUugaagGUCGCCAUGCAGUGg -3'
miRNA:   3'- -CC-GGCUCGG-------------UGG-----CAGCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 126160 0.69 0.795498
Target:  5'- uGCCGAGCgGCCGg-GCC-UACAGc- -3'
miRNA:   3'- cCGGCUCGgUGGCagCGGuAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 176431 0.73 0.553923
Target:  5'- uGCCuccGCCGCCGUCGCCAUcgucucaGCAGa- -3'
miRNA:   3'- cCGGcu-CGGUGGCAGCGGUA-------UGUCau -5'
15691 3' -57.3 NC_004065.1 + 48356 0.7 0.721827
Target:  5'- cGCCGccGCCACCGcCGCCGccACAGg- -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGUa-UGUCau -5'
15691 3' -57.3 NC_004065.1 + 56372 0.69 0.812696
Target:  5'- aGGCgaGcGCCGCCGUCGuCCGggACGGUc -3'
miRNA:   3'- -CCGg-CuCGGUGGCAGC-GGUa-UGUCAu -5'
15691 3' -57.3 NC_004065.1 + 164354 0.68 0.82928
Target:  5'- cGGUCucGGUUACCGUCGCCGUACc--- -3'
miRNA:   3'- -CCGGc-UCGGUGGCAGCGGUAUGucau -5'
15691 3' -57.3 NC_004065.1 + 108763 0.73 0.553923
Target:  5'- cGGCCGAGCCgucGCgGUCGUCGacgaggaccacgaUGCAGUc -3'
miRNA:   3'- -CCGGCUCGG---UGgCAGCGGU-------------AUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 201335 0.72 0.653422
Target:  5'- aGCCGccGCCuCCGUCGCCGgagGCGGg- -3'
miRNA:   3'- cCGGCu-CGGuGGCAGCGGUa--UGUCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.