miRNA display CGI


Results 21 - 40 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 19823 0.68 0.852879
Target:  5'- aGCCGAcGCUACCGcCGCCAccgACAc-- -3'
miRNA:   3'- cCGGCU-CGGUGGCaGCGGUa--UGUcau -5'
15691 3' -57.3 NC_004065.1 + 30225 0.68 0.82928
Target:  5'- uGCCGccGCCGCCGcCGCCAgcacCGGUc -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGUau--GUCAu -5'
15691 3' -57.3 NC_004065.1 + 109448 0.7 0.740845
Target:  5'- aGGCCGAGgCGCCGcCGCCGg------ -3'
miRNA:   3'- -CCGGCUCgGUGGCaGCGGUaugucau -5'
15691 3' -57.3 NC_004065.1 + 108763 0.73 0.553923
Target:  5'- cGGCCGAGCCgucGCgGUCGUCGacgaggaccacgaUGCAGUc -3'
miRNA:   3'- -CCGGCUCGG---UGgCAGCGGU-------------AUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 151426 0.66 0.913033
Target:  5'- aGGaaGGGCgGCCGgcgCGCCAgcucGCGGUc -3'
miRNA:   3'- -CCggCUCGgUGGCa--GCGGUa---UGUCAu -5'
15691 3' -57.3 NC_004065.1 + 116395 0.67 0.881698
Target:  5'- cGGCCccGAGCCGCCGcaggaCGCCGacCAGc- -3'
miRNA:   3'- -CCGG--CUCGGUGGCa----GCGGUauGUCau -5'
15691 3' -57.3 NC_004065.1 + 163739 0.68 0.82928
Target:  5'- aGCCGccGCCACCGgCGCCGccgACGGa- -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGUa--UGUCau -5'
15691 3' -57.3 NC_004065.1 + 176431 0.73 0.553923
Target:  5'- uGCCuccGCCGCCGUCGCCAUcgucucaGCAGa- -3'
miRNA:   3'- cCGGcu-CGGUGGCAGCGGUA-------UGUCau -5'
15691 3' -57.3 NC_004065.1 + 113445 0.67 0.881698
Target:  5'- gGGC--AGCCGCUGUCGuCCAUGCGc-- -3'
miRNA:   3'- -CCGgcUCGGUGGCAGC-GGUAUGUcau -5'
15691 3' -57.3 NC_004065.1 + 186240 0.76 0.416642
Target:  5'- gGGuCCGAGCCgaagugcaauccaGCUugaagGUCGCCAUGCAGUGg -3'
miRNA:   3'- -CC-GGCUCGG-------------UGG-----CAGCGGUAUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 164354 0.68 0.82928
Target:  5'- cGGUCucGGUUACCGUCGCCGUACc--- -3'
miRNA:   3'- -CCGGc-UCGGUGGCAGCGGUAUGucau -5'
15691 3' -57.3 NC_004065.1 + 201047 0.67 0.867685
Target:  5'- cGCCGAGaCGCCGUCGCCc------- -3'
miRNA:   3'- cCGGCUCgGUGGCAGCGGuaugucau -5'
15691 3' -57.3 NC_004065.1 + 126160 0.69 0.795498
Target:  5'- uGCCGAGCgGCCGg-GCC-UACAGc- -3'
miRNA:   3'- cCGGCUCGgUGGCagCGGuAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 138819 0.7 0.750225
Target:  5'- aGCgGAcGgCACCGUCGCCGU-CAGUc -3'
miRNA:   3'- cCGgCU-CgGUGGCAGCGGUAuGUCAu -5'
15691 3' -57.3 NC_004065.1 + 25111 0.71 0.682991
Target:  5'- cGUCGAgGCCGCCGUCGCCGccaacauCGGg- -3'
miRNA:   3'- cCGGCU-CGGUGGCAGCGGUau-----GUCau -5'
15691 3' -57.3 NC_004065.1 + 125078 0.73 0.583222
Target:  5'- aGGCgGAGCCGCUGUucguggaCGCCcgGCGGa- -3'
miRNA:   3'- -CCGgCUCGGUGGCA-------GCGGuaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 40012 0.66 0.918092
Target:  5'- cGGaCCGAGCCGCUgcggaaaGUCGCCuucguCGGc- -3'
miRNA:   3'- -CC-GGCUCGGUGG-------CAGCGGuau--GUCau -5'
15691 3' -57.3 NC_004065.1 + 70295 0.66 0.913033
Target:  5'- uGGCCGucuCCACCGUgacgagcgaCGCCA-GCAGg- -3'
miRNA:   3'- -CCGGCuc-GGUGGCA---------GCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 97020 0.67 0.89488
Target:  5'- cGGCCGcgauGCCgccuccGCCGUCGCCcUGCu--- -3'
miRNA:   3'- -CCGGCu---CGG------UGGCAGCGGuAUGucau -5'
15691 3' -57.3 NC_004065.1 + 134234 0.67 0.888395
Target:  5'- gGGCaCGGGCC-CCGgcCGCCgAUAUAGg- -3'
miRNA:   3'- -CCG-GCUCGGuGGCa-GCGG-UAUGUCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.