miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 164354 0.68 0.82928
Target:  5'- cGGUCucGGUUACCGUCGCCGUACc--- -3'
miRNA:   3'- -CCGGc-UCGGUGGCAGCGGUAUGucau -5'
15691 3' -57.3 NC_004065.1 + 90380 0.66 0.929191
Target:  5'- uGGCCGcggGGCCuccgGCCGgcggCGCCA-GCGGg- -3'
miRNA:   3'- -CCGGC---UCGG----UGGCa---GCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 30225 0.68 0.82928
Target:  5'- uGCCGccGCCGCCGcCGCCAgcacCGGUc -3'
miRNA:   3'- cCGGCu-CGGUGGCaGCGGUau--GUCAu -5'
15691 3' -57.3 NC_004065.1 + 151426 0.66 0.913033
Target:  5'- aGGaaGGGCgGCCGgcgCGCCAgcucGCGGUc -3'
miRNA:   3'- -CCggCUCGgUGGCa--GCGGUa---UGUCAu -5'
15691 3' -57.3 NC_004065.1 + 52784 0.65 0.932671
Target:  5'- cGGCgGGGCCGCCGggggucaguaucccUUGCCu--CGGUu -3'
miRNA:   3'- -CCGgCUCGGUGGC--------------AGCGGuauGUCAu -5'
15691 3' -57.3 NC_004065.1 + 109487 0.67 0.900533
Target:  5'- cGCCGcuaccGCCGCCGucucccgUCGCCGaGCAGg- -3'
miRNA:   3'- cCGGCu----CGGUGGC-------AGCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 127385 0.66 0.924029
Target:  5'- cGCCGGuagcGCCGCCGcCGCgAUGgGGg- -3'
miRNA:   3'- cCGGCU----CGGUGGCaGCGgUAUgUCau -5'
15691 3' -57.3 NC_004065.1 + 91437 0.66 0.918643
Target:  5'- cGCCGAcggcgcuuccGCgGCCGUCGCC-UGCGa-- -3'
miRNA:   3'- cCGGCU----------CGgUGGCAGCGGuAUGUcau -5'
15691 3' -57.3 NC_004065.1 + 162522 0.68 0.860378
Target:  5'- cGCaCGAGCCGCCGg-GCCAggucucggACGGg- -3'
miRNA:   3'- cCG-GCUCGGUGGCagCGGUa-------UGUCau -5'
15691 3' -57.3 NC_004065.1 + 195432 0.73 0.554893
Target:  5'- cGCCGcGUCGCCGUCGUCGgACAGg- -3'
miRNA:   3'- cCGGCuCGGUGGCAGCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 88405 0.73 0.584204
Target:  5'- cGCCGAGCCGCCacCGCCGgcaGCGGa- -3'
miRNA:   3'- cCGGCUCGGUGGcaGCGGUa--UGUCau -5'
15691 3' -57.3 NC_004065.1 + 229157 0.68 0.845191
Target:  5'- cGGCgGGG-CGCCcUCGCCcgGCAGUc -3'
miRNA:   3'- -CCGgCUCgGUGGcAGCGGuaUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 39269 0.68 0.845191
Target:  5'- aGGCC--GCCACCGUCcCCAU-CAGa- -3'
miRNA:   3'- -CCGGcuCGGUGGCAGcGGUAuGUCau -5'
15691 3' -57.3 NC_004065.1 + 103759 0.68 0.837323
Target:  5'- cGGCgGGGCCuccggACCGUCGCgCA-GCAGc- -3'
miRNA:   3'- -CCGgCUCGG-----UGGCAGCG-GUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 84827 0.68 0.837323
Target:  5'- gGGCCgGAGUuuuCACCGUCGUaaaACGGUGa -3'
miRNA:   3'- -CCGG-CUCG---GUGGCAGCGguaUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 125871 0.68 0.826833
Target:  5'- cGGCCGuGuCCACCaGUuugaucuuguucucCGCCGUGCuGUAg -3'
miRNA:   3'- -CCGGCuC-GGUGG-CA--------------GCGGUAUGuCAU- -5'
15691 3' -57.3 NC_004065.1 + 57767 0.68 0.821068
Target:  5'- cGUCGccGCCGCCGUCGCUcu-CGGUGg -3'
miRNA:   3'- cCGGCu-CGGUGGCAGCGGuauGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 22802 0.71 0.682991
Target:  5'- -aCCG-GCCACCGUCGCUAUcuUAGUGc -3'
miRNA:   3'- ccGGCuCGGUGGCAGCGGUAu-GUCAU- -5'
15691 3' -57.3 NC_004065.1 + 21958 0.72 0.603917
Target:  5'- cGGCCaGGGCCGUCGUCGgCAggACGGUGa -3'
miRNA:   3'- -CCGG-CUCGGUGGCAGCgGUa-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 170257 0.73 0.594048
Target:  5'- uGGCCGuGGCCGCCGcCGCCAccauCGGc- -3'
miRNA:   3'- -CCGGC-UCGGUGGCaGCGGUau--GUCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.