miRNA display CGI


Results 61 - 80 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 126900 0.73 0.574394
Target:  5'- cGCgUGAGCCGCCGUCGCCA-ACGc-- -3'
miRNA:   3'- cCG-GCUCGGUGGCAGCGGUaUGUcau -5'
15691 3' -57.3 NC_004065.1 + 195432 0.73 0.554893
Target:  5'- cGCCGcGUCGCCGUCGUCGgACAGg- -3'
miRNA:   3'- cCGGCuCGGUGGCAGCGGUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 165890 0.74 0.51653
Target:  5'- aGGCCGcacgcGCUGCCGUCGUgGUACGGa- -3'
miRNA:   3'- -CCGGCu----CGGUGGCAGCGgUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 42454 0.74 0.507102
Target:  5'- aGCCGAGaCGCgGUCGCCAUGCuGg- -3'
miRNA:   3'- cCGGCUCgGUGgCAGCGGUAUGuCau -5'
15691 3' -57.3 NC_004065.1 + 115160 0.69 0.812695
Target:  5'- cGGCCGGcGgCACCGUCGUCGc-CAGg- -3'
miRNA:   3'- -CCGGCU-CgGUGGCAGCGGUauGUCau -5'
15691 3' -57.3 NC_004065.1 + 57767 0.68 0.821068
Target:  5'- cGUCGccGCCGCCGUCGCUcu-CGGUGg -3'
miRNA:   3'- cCGGCu-CGGUGGCAGCGGuauGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 125871 0.68 0.826833
Target:  5'- cGGCCGuGuCCACCaGUuugaucuuguucucCGCCGUGCuGUAg -3'
miRNA:   3'- -CCGGCuC-GGUGG-CA--------------GCGGUAUGuCAU- -5'
15691 3' -57.3 NC_004065.1 + 30009 0.66 0.918643
Target:  5'- aGGCUGcGCgACCGUCaCCGgcGCGGUGg -3'
miRNA:   3'- -CCGGCuCGgUGGCAGcGGUa-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 109870 0.66 0.913033
Target:  5'- gGGCgGuGCCACCGgcgUCGCC--GCGGc- -3'
miRNA:   3'- -CCGgCuCGGUGGC---AGCGGuaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 194805 0.67 0.90115
Target:  5'- cGUCGAGCCcCUGaaCGCCGUgGCGGUGg -3'
miRNA:   3'- cCGGCUCGGuGGCa-GCGGUA-UGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 173883 0.67 0.89488
Target:  5'- cGCCGugugugugGGCCGCCGcCGCCucaacacuCGGUAg -3'
miRNA:   3'- cCGGC--------UCGGUGGCaGCGGuau-----GUCAU- -5'
15691 3' -57.3 NC_004065.1 + 127083 0.67 0.8936
Target:  5'- cGGCacauCGAGCUuaggcagcagcuCCGUCGCCGUcCAGUu -3'
miRNA:   3'- -CCG----GCUCGGu-----------GGCAGCGGUAuGUCAu -5'
15691 3' -57.3 NC_004065.1 + 103646 0.67 0.888395
Target:  5'- uGCgCGAGCagGCgGUCGCCGUGCGc-- -3'
miRNA:   3'- cCG-GCUCGg-UGgCAGCGGUAUGUcau -5'
15691 3' -57.3 NC_004065.1 + 123521 0.67 0.881698
Target:  5'- gGGuCCGGGCUGgUGUgGUCGUACAGg- -3'
miRNA:   3'- -CC-GGCUCGGUgGCAgCGGUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 159683 0.67 0.874793
Target:  5'- -cCCGAggcgcuccucGCCGCCGUCGCCGccgAUAGa- -3'
miRNA:   3'- ccGGCU----------CGGUGGCAGCGGUa--UGUCau -5'
15691 3' -57.3 NC_004065.1 + 61075 0.68 0.860378
Target:  5'- aGGCCGuuGGUCACCauGUCGCagauguCGUGCAGg- -3'
miRNA:   3'- -CCGGC--UCGGUGG--CAGCG------GUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 229157 0.68 0.845191
Target:  5'- cGGCgGGG-CGCCcUCGCCcgGCAGUc -3'
miRNA:   3'- -CCGgCUCgGUGGcAGCGGuaUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 39269 0.68 0.845191
Target:  5'- aGGCC--GCCACCGUCcCCAU-CAGa- -3'
miRNA:   3'- -CCGGcuCGGUGGCAGcGGUAuGUCau -5'
15691 3' -57.3 NC_004065.1 + 103759 0.68 0.837323
Target:  5'- cGGCgGGGCCuccggACCGUCGCgCA-GCAGc- -3'
miRNA:   3'- -CCGgCUCGG-----UGGCAGCG-GUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 84827 0.68 0.837323
Target:  5'- gGGCCgGAGUuuuCACCGUCGUaaaACGGUGa -3'
miRNA:   3'- -CCGG-CUCG---GUGGCAGCGguaUGUCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.