miRNA display CGI


Results 81 - 92 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 3' -57.3 NC_004065.1 + 159683 0.67 0.874793
Target:  5'- -cCCGAggcgcuccucGCCGCCGUCGCCGccgAUAGa- -3'
miRNA:   3'- ccGGCU----------CGGUGGCAGCGGUa--UGUCau -5'
15691 3' -57.3 NC_004065.1 + 124472 0.67 0.867685
Target:  5'- cGCCGuGCCGCUG-CGCCGggucCAGg- -3'
miRNA:   3'- cCGGCuCGGUGGCaGCGGUau--GUCau -5'
15691 3' -57.3 NC_004065.1 + 57767 0.68 0.821068
Target:  5'- cGUCGccGCCGCCGUCGCUcu-CGGUGg -3'
miRNA:   3'- cCGGCu-CGGUGGCAGCGGuauGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 125871 0.68 0.826833
Target:  5'- cGGCCGuGuCCACCaGUuugaucuuguucucCGCCGUGCuGUAg -3'
miRNA:   3'- -CCGGCuC-GGUGG-CA--------------GCGGUAUGuCAU- -5'
15691 3' -57.3 NC_004065.1 + 84827 0.68 0.837323
Target:  5'- gGGCCgGAGUuuuCACCGUCGUaaaACGGUGa -3'
miRNA:   3'- -CCGG-CUCG---GUGGCAGCGguaUGUCAU- -5'
15691 3' -57.3 NC_004065.1 + 103759 0.68 0.837323
Target:  5'- cGGCgGGGCCuccggACCGUCGCgCA-GCAGc- -3'
miRNA:   3'- -CCGgCUCGG-----UGGCAGCG-GUaUGUCau -5'
15691 3' -57.3 NC_004065.1 + 39269 0.68 0.845191
Target:  5'- aGGCC--GCCACCGUCcCCAU-CAGa- -3'
miRNA:   3'- -CCGGcuCGGUGGCAGcGGUAuGUCau -5'
15691 3' -57.3 NC_004065.1 + 229157 0.68 0.845191
Target:  5'- cGGCgGGG-CGCCcUCGCCcgGCAGUc -3'
miRNA:   3'- -CCGgCUCgGUGGcAGCGGuaUGUCAu -5'
15691 3' -57.3 NC_004065.1 + 61075 0.68 0.860378
Target:  5'- aGGCCGuuGGUCACCauGUCGCagauguCGUGCAGg- -3'
miRNA:   3'- -CCGGC--UCGGUGG--CAGCG------GUAUGUCau -5'
15691 3' -57.3 NC_004065.1 + 162522 0.68 0.860378
Target:  5'- cGCaCGAGCCGCCGg-GCCAggucucggACGGg- -3'
miRNA:   3'- cCG-GCUCGGUGGCagCGGUa-------UGUCau -5'
15691 3' -57.3 NC_004065.1 + 195392 0.67 0.867685
Target:  5'- cGGCCGAGgucuuCCACgGcgaGCCGUACAcGUAc -3'
miRNA:   3'- -CCGGCUC-----GGUGgCag-CGGUAUGU-CAU- -5'
15691 3' -57.3 NC_004065.1 + 91185 0.66 0.929191
Target:  5'- cGGCCGcGGaagCGCCGUCGgCGUGCGc-- -3'
miRNA:   3'- -CCGGC-UCg--GUGGCAGCgGUAUGUcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.