Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 117454 | 0.66 | 0.991369 |
Target: 5'- aCUGCgucGUcCGGCUccGCGGcCGCUCGc -3' miRNA: 3'- cGACGa--CAuGCCGA--UGCUaGCGAGCc -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 153137 | 0.66 | 0.991257 |
Target: 5'- gGCUGCgguugggGUugGgguggagguugaaGCUGCGGUgGCUCuGGc -3' miRNA: 3'- -CGACGa------CAugC-------------CGAUGCUAgCGAG-CC- -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 65991 | 0.66 | 0.990194 |
Target: 5'- aGgUGCUGUACGGCgu-GAUcCGCaacgUGGu -3' miRNA: 3'- -CgACGACAUGCCGaugCUA-GCGa---GCC- -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 22655 | 0.66 | 0.990194 |
Target: 5'- uCUGCUGUACGacCUGcCGGUCGCgguaUCGu -3' miRNA: 3'- cGACGACAUGCc-GAU-GCUAGCG----AGCc -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 169579 | 0.66 | 0.990194 |
Target: 5'- uGCcGCUGUcGCGGCUcCGGccgguUCGCggGGg -3' miRNA: 3'- -CGaCGACA-UGCCGAuGCU-----AGCGagCC- -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 147662 | 0.66 | 0.990194 |
Target: 5'- uGCUGCUGgacGCGGUUGCG-UC-CggGGg -3' miRNA: 3'- -CGACGACa--UGCCGAUGCuAGcGagCC- -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 124278 | 0.66 | 0.988897 |
Target: 5'- cGCUGCUGUACaGCaccaagGCG-UCGacggCGGu -3' miRNA: 3'- -CGACGACAUGcCGa-----UGCuAGCga--GCC- -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 114937 | 0.66 | 0.988897 |
Target: 5'- uGCUGCUGa--GGCggGCGAUCGgCcCGa -3' miRNA: 3'- -CGACGACaugCCGa-UGCUAGC-GaGCc -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 24428 | 0.66 | 0.988761 |
Target: 5'- cGCUGCUGccgACguagaccucgggaGGCUgGCGGUaguggggcaGCUCGGa -3' miRNA: 3'- -CGACGACa--UG-------------CCGA-UGCUAg--------CGAGCC- -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 167230 | 0.66 | 0.987471 |
Target: 5'- cCUGCUGgggGCGGCgcaguCGcaggaGUCGC-CGGu -3' miRNA: 3'- cGACGACa--UGCCGau---GC-----UAGCGaGCC- -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 66378 | 0.66 | 0.987471 |
Target: 5'- cGCUGaucGUcgaGCGGCUGCGcUCGCUgaccgaGGa -3' miRNA: 3'- -CGACga-CA---UGCCGAUGCuAGCGAg-----CC- -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 159942 | 0.66 | 0.985907 |
Target: 5'- gGCgGCg--ACGGCgGCGAggagCGcCUCGGg -3' miRNA: 3'- -CGaCGacaUGCCGaUGCUa---GC-GAGCC- -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 90622 | 0.67 | 0.984198 |
Target: 5'- --aGCUGUGCGGCgcgugcgGCGGcCGCUg-- -3' miRNA: 3'- cgaCGACAUGCCGa------UGCUaGCGAgcc -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 218295 | 0.67 | 0.984198 |
Target: 5'- -aUGCUGgu-GGCcGCGAUCGUcgCGGu -3' miRNA: 3'- cgACGACaugCCGaUGCUAGCGa-GCC- -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 125906 | 0.67 | 0.980314 |
Target: 5'- -gUGCUGUA-GGCc-CGGcCGCUCGGc -3' miRNA: 3'- cgACGACAUgCCGauGCUaGCGAGCC- -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 127643 | 0.67 | 0.975759 |
Target: 5'- cGCUGCcGcUGCGGCgcCGAggGCggCGGg -3' miRNA: 3'- -CGACGaC-AUGCCGauGCUagCGa-GCC- -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 78902 | 0.67 | 0.975759 |
Target: 5'- cGCUGCgcugGCGGC--CGAUCuCUUGGg -3' miRNA: 3'- -CGACGaca-UGCCGauGCUAGcGAGCC- -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 22888 | 0.68 | 0.96962 |
Target: 5'- cGCUGCUGUcgcagccucccaacGCGGUcagugGCGG-CGgUCGGc -3' miRNA: 3'- -CGACGACA--------------UGCCGa----UGCUaGCgAGCC- -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 1123 | 0.68 | 0.967549 |
Target: 5'- uGgUGuCUGU-CGGCUGCGAguguugUUGCUCGu -3' miRNA: 3'- -CgAC-GACAuGCCGAUGCU------AGCGAGCc -5' |
|||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 100261 | 0.68 | 0.964419 |
Target: 5'- -aUGCUGUACGGCgGCGGcgGCUaCGa -3' miRNA: 3'- cgACGACAUGCCGaUGCUagCGA-GCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home