miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 5' -53.7 NC_004065.1 + 33941 1.12 0.005109
Target:  5'- cGCUGCUGUACGGCUACGAUCGCUCGGc -3'
miRNA:   3'- -CGACGACAUGCCGAUGCUAGCGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 118493 0.79 0.497353
Target:  5'- cGCUGUUGcUGCGGUgggGCcuGUCGCUCGGg -3'
miRNA:   3'- -CGACGAC-AUGCCGa--UGc-UAGCGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 216853 0.76 0.623665
Target:  5'- cGCcGCUGUACGGUUucucaccgguuugACGGUCGUUCGcGg -3'
miRNA:   3'- -CGaCGACAUGCCGA-------------UGCUAGCGAGC-C- -5'
15691 5' -53.7 NC_004065.1 + 33717 0.76 0.654695
Target:  5'- gGCguaCUGUAUGGCgACGGUgGCUCGGc -3'
miRNA:   3'- -CGac-GACAUGCCGaUGCUAgCGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 62873 0.73 0.79802
Target:  5'- uGCUGCUGccGCGGCUGCugcCGCcggCGGg -3'
miRNA:   3'- -CGACGACa-UGCCGAUGcuaGCGa--GCC- -5'
15691 5' -53.7 NC_004065.1 + 201360 0.72 0.831968
Target:  5'- aCUGCUGcGCGaGCUGCGccUCGC-CGGg -3'
miRNA:   3'- cGACGACaUGC-CGAUGCu-AGCGaGCC- -5'
15691 5' -53.7 NC_004065.1 + 37119 0.71 0.884447
Target:  5'- uGCUGCUGgGCGGCgAUGcgCGUUCu- -3'
miRNA:   3'- -CGACGACaUGCCGaUGCuaGCGAGcc -5'
15691 5' -53.7 NC_004065.1 + 200118 0.71 0.897591
Target:  5'- -gUGCUGUGCGGCaccgACGAgUGCcugCGGc -3'
miRNA:   3'- cgACGACAUGCCGa---UGCUaGCGa--GCC- -5'
15691 5' -53.7 NC_004065.1 + 121411 0.71 0.897591
Target:  5'- aGCUGCccgccGgacgGCGGCUucaGCGGaugggCGCUCGGg -3'
miRNA:   3'- -CGACGa----Ca---UGCCGA---UGCUa----GCGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 77767 0.71 0.897591
Target:  5'- cCUGCUGUGCGaGCUGaugGcgUGCUCGu -3'
miRNA:   3'- cGACGACAUGC-CGAUg--CuaGCGAGCc -5'
15691 5' -53.7 NC_004065.1 + 138113 0.7 0.90985
Target:  5'- --cGCUGU-CGGCgGCGAUCGacgCGGu -3'
miRNA:   3'- cgaCGACAuGCCGaUGCUAGCga-GCC- -5'
15691 5' -53.7 NC_004065.1 + 78098 0.69 0.936528
Target:  5'- --cGCUGUgcGCGGCUaacauGCGAUCGa-CGGa -3'
miRNA:   3'- cgaCGACA--UGCCGA-----UGCUAGCgaGCC- -5'
15691 5' -53.7 NC_004065.1 + 76997 0.69 0.941631
Target:  5'- -aUGCUGgaggaggaggaggcgGCGuGCUGCGAccUCGaCUCGGa -3'
miRNA:   3'- cgACGACa--------------UGC-CGAUGCU--AGC-GAGCC- -5'
15691 5' -53.7 NC_004065.1 + 126516 0.69 0.945602
Target:  5'- cGCUGCUGaacgcgcuggGCGGCU-CGAUcccCGCaCGGg -3'
miRNA:   3'- -CGACGACa---------UGCCGAuGCUA---GCGaGCC- -5'
15691 5' -53.7 NC_004065.1 + 118943 0.69 0.94898
Target:  5'- gGUUGCUGUuCGGCauccacaCGCUCGGg -3'
miRNA:   3'- -CGACGACAuGCCGaugcua-GCGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 70352 0.69 0.949802
Target:  5'- cGCUGCcgGUGCuGCU-CG-UCGcCUCGGg -3'
miRNA:   3'- -CGACGa-CAUGcCGAuGCuAGC-GAGCC- -5'
15691 5' -53.7 NC_004065.1 + 113102 0.69 0.95378
Target:  5'- aGCUGCUGUccgACGGCaACaucuucuucUCGCUgGGa -3'
miRNA:   3'- -CGACGACA---UGCCGaUGcu-------AGCGAgCC- -5'
15691 5' -53.7 NC_004065.1 + 127140 0.68 0.957539
Target:  5'- gGCggcGCUaccgGCGGCgGCGAUCGCccucUCGGu -3'
miRNA:   3'- -CGa--CGAca--UGCCGaUGCUAGCG----AGCC- -5'
15691 5' -53.7 NC_004065.1 + 58522 0.68 0.961084
Target:  5'- uGCUGCUGga-GGUggauugcuucUugGAguuUCGCUUGGg -3'
miRNA:   3'- -CGACGACaugCCG----------AugCU---AGCGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 100261 0.68 0.964419
Target:  5'- -aUGCUGUACGGCgGCGGcgGCUaCGa -3'
miRNA:   3'- cgACGACAUGCCGaUGCUagCGA-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.