miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 5' -53.7 NC_004065.1 + 117454 0.66 0.991369
Target:  5'- aCUGCgucGUcCGGCUccGCGGcCGCUCGc -3'
miRNA:   3'- cGACGa--CAuGCCGA--UGCUaGCGAGCc -5'
15691 5' -53.7 NC_004065.1 + 118493 0.79 0.497353
Target:  5'- cGCUGUUGcUGCGGUgggGCcuGUCGCUCGGg -3'
miRNA:   3'- -CGACGAC-AUGCCGa--UGc-UAGCGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 118943 0.69 0.94898
Target:  5'- gGUUGCUGUuCGGCauccacaCGCUCGGg -3'
miRNA:   3'- -CGACGACAuGCCGaugcua-GCGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 121411 0.71 0.897591
Target:  5'- aGCUGCccgccGgacgGCGGCUucaGCGGaugggCGCUCGGg -3'
miRNA:   3'- -CGACGa----Ca---UGCCGA---UGCUa----GCGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 124278 0.66 0.988897
Target:  5'- cGCUGCUGUACaGCaccaagGCG-UCGacggCGGu -3'
miRNA:   3'- -CGACGACAUGcCGa-----UGCuAGCga--GCC- -5'
15691 5' -53.7 NC_004065.1 + 125906 0.67 0.980314
Target:  5'- -gUGCUGUA-GGCc-CGGcCGCUCGGc -3'
miRNA:   3'- cgACGACAUgCCGauGCUaGCGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 126516 0.69 0.945602
Target:  5'- cGCUGCUGaacgcgcuggGCGGCU-CGAUcccCGCaCGGg -3'
miRNA:   3'- -CGACGACa---------UGCCGAuGCUA---GCGaGCC- -5'
15691 5' -53.7 NC_004065.1 + 127140 0.68 0.957539
Target:  5'- gGCggcGCUaccgGCGGCgGCGAUCGCccucUCGGu -3'
miRNA:   3'- -CGa--CGAca--UGCCGaUGCUAGCG----AGCC- -5'
15691 5' -53.7 NC_004065.1 + 127643 0.67 0.975759
Target:  5'- cGCUGCcGcUGCGGCgcCGAggGCggCGGg -3'
miRNA:   3'- -CGACGaC-AUGCCGauGCUagCGa-GCC- -5'
15691 5' -53.7 NC_004065.1 + 138113 0.7 0.90985
Target:  5'- --cGCUGU-CGGCgGCGAUCGacgCGGu -3'
miRNA:   3'- cgaCGACAuGCCGaUGCUAGCga-GCC- -5'
15691 5' -53.7 NC_004065.1 + 147662 0.66 0.990194
Target:  5'- uGCUGCUGgacGCGGUUGCG-UC-CggGGg -3'
miRNA:   3'- -CGACGACa--UGCCGAUGCuAGcGagCC- -5'
15691 5' -53.7 NC_004065.1 + 153137 0.66 0.991257
Target:  5'- gGCUGCgguugggGUugGgguggagguugaaGCUGCGGUgGCUCuGGc -3'
miRNA:   3'- -CGACGa------CAugC-------------CGAUGCUAgCGAG-CC- -5'
15691 5' -53.7 NC_004065.1 + 159942 0.66 0.985907
Target:  5'- gGCgGCg--ACGGCgGCGAggagCGcCUCGGg -3'
miRNA:   3'- -CGaCGacaUGCCGaUGCUa---GC-GAGCC- -5'
15691 5' -53.7 NC_004065.1 + 167230 0.66 0.987471
Target:  5'- cCUGCUGgggGCGGCgcaguCGcaggaGUCGC-CGGu -3'
miRNA:   3'- cGACGACa--UGCCGau---GC-----UAGCGaGCC- -5'
15691 5' -53.7 NC_004065.1 + 169579 0.66 0.990194
Target:  5'- uGCcGCUGUcGCGGCUcCGGccgguUCGCggGGg -3'
miRNA:   3'- -CGaCGACA-UGCCGAuGCU-----AGCGagCC- -5'
15691 5' -53.7 NC_004065.1 + 200118 0.71 0.897591
Target:  5'- -gUGCUGUGCGGCaccgACGAgUGCcugCGGc -3'
miRNA:   3'- cgACGACAUGCCGa---UGCUaGCGa--GCC- -5'
15691 5' -53.7 NC_004065.1 + 201360 0.72 0.831968
Target:  5'- aCUGCUGcGCGaGCUGCGccUCGC-CGGg -3'
miRNA:   3'- cGACGACaUGC-CGAUGCu-AGCGaGCC- -5'
15691 5' -53.7 NC_004065.1 + 216853 0.76 0.623665
Target:  5'- cGCcGCUGUACGGUUucucaccgguuugACGGUCGUUCGcGg -3'
miRNA:   3'- -CGaCGACAUGCCGA-------------UGCUAGCGAGC-C- -5'
15691 5' -53.7 NC_004065.1 + 218295 0.67 0.984198
Target:  5'- -aUGCUGgu-GGCcGCGAUCGUcgCGGu -3'
miRNA:   3'- cgACGACaugCCGaUGCUAGCGa-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.