miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15691 5' -53.7 NC_004065.1 + 117454 0.66 0.991369
Target:  5'- aCUGCgucGUcCGGCUccGCGGcCGCUCGc -3'
miRNA:   3'- cGACGa--CAuGCCGA--UGCUaGCGAGCc -5'
15691 5' -53.7 NC_004065.1 + 22888 0.68 0.96962
Target:  5'- cGCUGCUGUcgcagccucccaacGCGGUcagugGCGG-CGgUCGGc -3'
miRNA:   3'- -CGACGACA--------------UGCCGa----UGCUaGCgAGCC- -5'
15691 5' -53.7 NC_004065.1 + 127643 0.67 0.975759
Target:  5'- cGCUGCcGcUGCGGCgcCGAggGCggCGGg -3'
miRNA:   3'- -CGACGaC-AUGCCGauGCUagCGa-GCC- -5'
15691 5' -53.7 NC_004065.1 + 125906 0.67 0.980314
Target:  5'- -gUGCUGUA-GGCc-CGGcCGCUCGGc -3'
miRNA:   3'- cgACGACAUgCCGauGCUaGCGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 66378 0.66 0.987471
Target:  5'- cGCUGaucGUcgaGCGGCUGCGcUCGCUgaccgaGGa -3'
miRNA:   3'- -CGACga-CA---UGCCGAUGCuAGCGAg-----CC- -5'
15691 5' -53.7 NC_004065.1 + 24428 0.66 0.988761
Target:  5'- cGCUGCUGccgACguagaccucgggaGGCUgGCGGUaguggggcaGCUCGGa -3'
miRNA:   3'- -CGACGACa--UG-------------CCGA-UGCUAg--------CGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 65991 0.66 0.990194
Target:  5'- aGgUGCUGUACGGCgu-GAUcCGCaacgUGGu -3'
miRNA:   3'- -CgACGACAUGCCGaugCUA-GCGa---GCC- -5'
15691 5' -53.7 NC_004065.1 + 22655 0.66 0.990194
Target:  5'- uCUGCUGUACGacCUGcCGGUCGCgguaUCGu -3'
miRNA:   3'- cGACGACAUGCc-GAU-GCUAGCG----AGCc -5'
15691 5' -53.7 NC_004065.1 + 169579 0.66 0.990194
Target:  5'- uGCcGCUGUcGCGGCUcCGGccgguUCGCggGGg -3'
miRNA:   3'- -CGaCGACA-UGCCGAuGCU-----AGCGagCC- -5'
15691 5' -53.7 NC_004065.1 + 1123 0.68 0.967549
Target:  5'- uGgUGuCUGU-CGGCUGCGAguguugUUGCUCGu -3'
miRNA:   3'- -CgAC-GACAuGCCGAUGCU------AGCGAGCc -5'
15691 5' -53.7 NC_004065.1 + 58522 0.68 0.961084
Target:  5'- uGCUGCUGga-GGUggauugcuucUugGAguuUCGCUUGGg -3'
miRNA:   3'- -CGACGACaugCCG----------AugCU---AGCGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 127140 0.68 0.957539
Target:  5'- gGCggcGCUaccgGCGGCgGCGAUCGCccucUCGGu -3'
miRNA:   3'- -CGa--CGAca--UGCCGaUGCUAGCG----AGCC- -5'
15691 5' -53.7 NC_004065.1 + 216853 0.76 0.623665
Target:  5'- cGCcGCUGUACGGUUucucaccgguuugACGGUCGUUCGcGg -3'
miRNA:   3'- -CGaCGACAUGCCGA-------------UGCUAGCGAGC-C- -5'
15691 5' -53.7 NC_004065.1 + 33717 0.76 0.654695
Target:  5'- gGCguaCUGUAUGGCgACGGUgGCUCGGc -3'
miRNA:   3'- -CGac-GACAUGCCGaUGCUAgCGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 201360 0.72 0.831968
Target:  5'- aCUGCUGcGCGaGCUGCGccUCGC-CGGg -3'
miRNA:   3'- cGACGACaUGC-CGAUGCu-AGCGaGCC- -5'
15691 5' -53.7 NC_004065.1 + 121411 0.71 0.897591
Target:  5'- aGCUGCccgccGgacgGCGGCUucaGCGGaugggCGCUCGGg -3'
miRNA:   3'- -CGACGa----Ca---UGCCGA---UGCUa----GCGAGCC- -5'
15691 5' -53.7 NC_004065.1 + 77767 0.71 0.897591
Target:  5'- cCUGCUGUGCGaGCUGaugGcgUGCUCGu -3'
miRNA:   3'- cGACGACAUGC-CGAUg--CuaGCGAGCc -5'
15691 5' -53.7 NC_004065.1 + 78098 0.69 0.936528
Target:  5'- --cGCUGUgcGCGGCUaacauGCGAUCGa-CGGa -3'
miRNA:   3'- cgaCGACA--UGCCGA-----UGCUAGCgaGCC- -5'
15691 5' -53.7 NC_004065.1 + 76997 0.69 0.941631
Target:  5'- -aUGCUGgaggaggaggaggcgGCGuGCUGCGAccUCGaCUCGGa -3'
miRNA:   3'- cgACGACa--------------UGC-CGAUGCU--AGC-GAGCC- -5'
15691 5' -53.7 NC_004065.1 + 118943 0.69 0.94898
Target:  5'- gGUUGCUGUuCGGCauccacaCGCUCGGg -3'
miRNA:   3'- -CGACGACAuGCCGaugcua-GCGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.