Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15691 | 5' | -53.7 | NC_004065.1 | + | 127140 | 0.68 | 0.957539 |
Target: 5'- gGCggcGCUaccgGCGGCgGCGAUCGCccucUCGGu -3' miRNA: 3'- -CGa--CGAca--UGCCGaUGCUAGCG----AGCC- -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 90622 | 0.67 | 0.984198 |
Target: 5'- --aGCUGUGCGGCgcgugcgGCGGcCGCUg-- -3' miRNA: 3'- cgaCGACAUGCCGa------UGCUaGCGAgcc -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 218295 | 0.67 | 0.984198 |
Target: 5'- -aUGCUGgu-GGCcGCGAUCGUcgCGGu -3' miRNA: 3'- cgACGACaugCCGaUGCUAGCGa-GCC- -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 159942 | 0.66 | 0.985907 |
Target: 5'- gGCgGCg--ACGGCgGCGAggagCGcCUCGGg -3' miRNA: 3'- -CGaCGacaUGCCGaUGCUa---GC-GAGCC- -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 167230 | 0.66 | 0.987471 |
Target: 5'- cCUGCUGgggGCGGCgcaguCGcaggaGUCGC-CGGu -3' miRNA: 3'- cGACGACa--UGCCGau---GC-----UAGCGaGCC- -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 124278 | 0.66 | 0.988897 |
Target: 5'- cGCUGCUGUACaGCaccaagGCG-UCGacggCGGu -3' miRNA: 3'- -CGACGACAUGcCGa-----UGCuAGCga--GCC- -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 114937 | 0.66 | 0.988897 |
Target: 5'- uGCUGCUGa--GGCggGCGAUCGgCcCGa -3' miRNA: 3'- -CGACGACaugCCGa-UGCUAGC-GaGCc -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 147662 | 0.66 | 0.990194 |
Target: 5'- uGCUGCUGgacGCGGUUGCG-UC-CggGGg -3' miRNA: 3'- -CGACGACa--UGCCGAUGCuAGcGagCC- -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 78902 | 0.67 | 0.975759 |
Target: 5'- cGCUGCgcugGCGGC--CGAUCuCUUGGg -3' miRNA: 3'- -CGACGaca-UGCCGauGCUAGcGAGCC- -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 100261 | 0.68 | 0.964419 |
Target: 5'- -aUGCUGUACGGCgGCGGcgGCUaCGa -3' miRNA: 3'- cgACGACAUGCCGaUGCUagCGA-GCc -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 113102 | 0.69 | 0.95378 |
Target: 5'- aGCUGCUGUccgACGGCaACaucuucuucUCGCUgGGa -3' miRNA: 3'- -CGACGACA---UGCCGaUGcu-------AGCGAgCC- -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 70352 | 0.69 | 0.949802 |
Target: 5'- cGCUGCcgGUGCuGCU-CG-UCGcCUCGGg -3' miRNA: 3'- -CGACGa-CAUGcCGAuGCuAGC-GAGCC- -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 126516 | 0.69 | 0.945602 |
Target: 5'- cGCUGCUGaacgcgcuggGCGGCU-CGAUcccCGCaCGGg -3' miRNA: 3'- -CGACGACa---------UGCCGAuGCUA---GCGaGCC- -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 138113 | 0.7 | 0.90985 |
Target: 5'- --cGCUGU-CGGCgGCGAUCGacgCGGu -3' miRNA: 3'- cgaCGACAuGCCGaUGCUAGCga-GCC- -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 200118 | 0.71 | 0.897591 |
Target: 5'- -gUGCUGUGCGGCaccgACGAgUGCcugCGGc -3' miRNA: 3'- cgACGACAUGCCGa---UGCUaGCGa--GCC- -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 37119 | 0.71 | 0.884447 |
Target: 5'- uGCUGCUGgGCGGCgAUGcgCGUUCu- -3' miRNA: 3'- -CGACGACaUGCCGaUGCuaGCGAGcc -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 62873 | 0.73 | 0.79802 |
Target: 5'- uGCUGCUGccGCGGCUGCugcCGCcggCGGg -3' miRNA: 3'- -CGACGACa-UGCCGAUGcuaGCGa--GCC- -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 33941 | 1.12 | 0.005109 |
Target: 5'- cGCUGCUGUACGGCUACGAUCGCUCGGc -3' miRNA: 3'- -CGACGACAUGCCGAUGCUAGCGAGCC- -5' |
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15691 | 5' | -53.7 | NC_004065.1 | + | 153137 | 0.66 | 0.991257 |
Target: 5'- gGCUGCgguugggGUugGgguggagguugaaGCUGCGGUgGCUCuGGc -3' miRNA: 3'- -CGACGa------CAugC-------------CGAUGCUAgCGAG-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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