miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 3' -55 NC_004065.1 + 111109 0.65 0.983284
Target:  5'- -aUgGCGACGGUucGACGcGGGcGGCCCg -3'
miRNA:   3'- gaAgCGCUGCUAc-UUGUcCCC-CUGGG- -5'
15692 3' -55 NC_004065.1 + 24295 0.65 0.983284
Target:  5'- --cCGCGACaGAUGAu--GGGGcGACgCa -3'
miRNA:   3'- gaaGCGCUG-CUACUuguCCCC-CUGgG- -5'
15692 3' -55 NC_004065.1 + 93523 0.65 0.983284
Target:  5'- uUUCGCGGgGGau-GCGGGGGGAg-- -3'
miRNA:   3'- gAAGCGCUgCUacuUGUCCCCCUggg -5'
15692 3' -55 NC_004065.1 + 53679 0.65 0.983284
Target:  5'- -gUCGgGGCGA-GAACGacGuGGGGACUa -3'
miRNA:   3'- gaAGCgCUGCUaCUUGU--C-CCCCUGGg -5'
15692 3' -55 NC_004065.1 + 49861 0.65 0.983099
Target:  5'- --cUGCGA-GAUGAACGagcGGuucgucaGGGACCCg -3'
miRNA:   3'- gaaGCGCUgCUACUUGU---CC-------CCCUGGG- -5'
15692 3' -55 NC_004065.1 + 143471 0.65 0.982724
Target:  5'- --gCGCGGCGAacgcggccuuagGAACAGaucuagguagagcGGGGGCCg -3'
miRNA:   3'- gaaGCGCUGCUa-----------CUUGUC-------------CCCCUGGg -5'
15692 3' -55 NC_004065.1 + 65616 0.66 0.981365
Target:  5'- -aUCGCGuucACGcUGGAcCAGGaGGACCUg -3'
miRNA:   3'- gaAGCGC---UGCuACUU-GUCCcCCUGGG- -5'
15692 3' -55 NC_004065.1 + 109710 0.66 0.981365
Target:  5'- --gCGCGGCGAcccuCGGGGGGcaacgcuuucGCCUa -3'
miRNA:   3'- gaaGCGCUGCUacuuGUCCCCC----------UGGG- -5'
15692 3' -55 NC_004065.1 + 46702 0.66 0.981365
Target:  5'- -aUCGUcACGGccuccuggcucgUGAACAgGGGGGAUUCg -3'
miRNA:   3'- gaAGCGcUGCU------------ACUUGU-CCCCCUGGG- -5'
15692 3' -55 NC_004065.1 + 36894 0.66 0.981365
Target:  5'- -aUCGcCGACGuUGAuCuGGGGGGCg- -3'
miRNA:   3'- gaAGC-GCUGCuACUuGuCCCCCUGgg -5'
15692 3' -55 NC_004065.1 + 70559 0.66 0.981365
Target:  5'- --aCGCGGCcGUGu--GGGGGGugCUg -3'
miRNA:   3'- gaaGCGCUGcUACuugUCCCCCugGG- -5'
15692 3' -55 NC_004065.1 + 201590 0.66 0.981365
Target:  5'- gUUCGCGugGAUcucacgucccGGCAGGGcGGAgaUCCu -3'
miRNA:   3'- gAAGCGCugCUAc---------UUGUCCC-CCU--GGG- -5'
15692 3' -55 NC_004065.1 + 110158 0.66 0.981365
Target:  5'- --cCGCGGCGGacGAGCc--GGGACCCc -3'
miRNA:   3'- gaaGCGCUGCUa-CUUGuccCCCUGGG- -5'
15692 3' -55 NC_004065.1 + 199959 0.66 0.979927
Target:  5'- uUUCGCGucgaguCGGUGcugagcgugaucggaAACGGGGcgaucuuccacacGGACCCg -3'
miRNA:   3'- gAAGCGCu-----GCUAC---------------UUGUCCC-------------CCUGGG- -5'
15692 3' -55 NC_004065.1 + 201213 0.66 0.979286
Target:  5'- --gCGCGGCGAcgUGcguGCAGa-GGACCCg -3'
miRNA:   3'- gaaGCGCUGCU--ACu--UGUCccCCUGGG- -5'
15692 3' -55 NC_004065.1 + 30823 0.66 0.979286
Target:  5'- --cCGCGGCG--GAACGGGGGcugguauguACCCu -3'
miRNA:   3'- gaaGCGCUGCuaCUUGUCCCCc--------UGGG- -5'
15692 3' -55 NC_004065.1 + 142663 0.66 0.979286
Target:  5'- gUUCGUGGcCGAgGGGCgAGGGGGAgUg -3'
miRNA:   3'- gAAGCGCU-GCUaCUUG-UCCCCCUgGg -5'
15692 3' -55 NC_004065.1 + 91863 0.66 0.978408
Target:  5'- aCUUCuGCGGCgcggucaggacgccGAUGAGCacauacgAGGGGGGCguCCu -3'
miRNA:   3'- -GAAG-CGCUG--------------CUACUUG-------UCCCCCUG--GG- -5'
15692 3' -55 NC_004065.1 + 200815 0.66 0.977039
Target:  5'- --gCGCGGgGAUcGGACGGGGcGacggggacGACCCg -3'
miRNA:   3'- gaaGCGCUgCUA-CUUGUCCC-C--------CUGGG- -5'
15692 3' -55 NC_004065.1 + 193444 0.66 0.977039
Target:  5'- -cUCGUcuCGAUc-AgAGGGGGGCCCa -3'
miRNA:   3'- gaAGCGcuGCUAcuUgUCCCCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.