miRNA display CGI


Results 1 - 20 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 176078 0.65 0.652292
Target:  5'- uUGuuGUUgCUGCUGCCucgagaaGCCGCCGCa -3'
miRNA:   3'- uACugUAGgGGCGGCGG-------CGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 106348 0.65 0.652292
Target:  5'- -cGACAUCCUCGugaacguCCGaCCGUCGauGCCc -3'
miRNA:   3'- uaCUGUAGGGGC-------GGC-GGCGGCggCGG- -5'
15692 5' -64.7 NC_004065.1 + 43894 0.65 0.652292
Target:  5'- -aGACAUCCUggagucggagucgCGUCGaugCGCCGCCaCCa -3'
miRNA:   3'- uaCUGUAGGG-------------GCGGCg--GCGGCGGcGG- -5'
15692 5' -64.7 NC_004065.1 + 197362 0.66 0.643819
Target:  5'- -gGGCcgauUCUCCGCCGCgGgCCGUgGCg -3'
miRNA:   3'- uaCUGu---AGGGGCGGCGgC-GGCGgCGg -5'
15692 5' -64.7 NC_004065.1 + 121570 0.66 0.643819
Target:  5'- -aGACGagCCCCGagUGCgggGCCGCUGCCc -3'
miRNA:   3'- uaCUGUa-GGGGCg-GCGg--CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 41731 0.66 0.643819
Target:  5'- -cGACG-CCCCGgCGCaCGCUGCUuaCCa -3'
miRNA:   3'- uaCUGUaGGGGCgGCG-GCGGCGGc-GG- -5'
15692 5' -64.7 NC_004065.1 + 100232 0.66 0.643819
Target:  5'- -aGACGacgaCCCGCgGCCcgaGCaCGCCGCg -3'
miRNA:   3'- uaCUGUag--GGGCGgCGG---CG-GCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 44283 0.66 0.643819
Target:  5'- cAUGugGgCCCgGUCGauCCGCCugcuguGCCGCCu -3'
miRNA:   3'- -UACugUaGGGgCGGC--GGCGG------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 171253 0.66 0.642877
Target:  5'- cGUGACcUUCCaCGUCGCCucuuuccaaucggGcCCGCCGUCu -3'
miRNA:   3'- -UACUGuAGGG-GCGGCGG-------------C-GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 39962 0.66 0.640993
Target:  5'- cUGuACGuuUCCCCgacGCCGuuGacggugucuguacaCCGCCGCCa -3'
miRNA:   3'- uAC-UGU--AGGGG---CGGCggC--------------GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 128582 0.66 0.638167
Target:  5'- -cGACGUCggcggcgaaggcgcaUCCGCaCG-CGCCaGCCGCCc -3'
miRNA:   3'- uaCUGUAG---------------GGGCG-GCgGCGG-CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 166101 0.66 0.634398
Target:  5'- -aGACcgUCCgGCC-CCGCCGUC-CCu -3'
miRNA:   3'- uaCUGuaGGGgCGGcGGCGGCGGcGG- -5'
15692 5' -64.7 NC_004065.1 + 132081 0.66 0.634398
Target:  5'- ----gGUCCCCaCCGCUGCCa-CGCCg -3'
miRNA:   3'- uacugUAGGGGcGGCGGCGGcgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 207956 0.66 0.634398
Target:  5'- uUGACGaCCCCGUCGCaCGaCGagGCCa -3'
miRNA:   3'- uACUGUaGGGGCGGCG-GCgGCggCGG- -5'
15692 5' -64.7 NC_004065.1 + 68020 0.66 0.634398
Target:  5'- -gGGCG-CCCgCGCCGuUCGUcaCGCCGUCg -3'
miRNA:   3'- uaCUGUaGGG-GCGGC-GGCG--GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 190148 0.66 0.634398
Target:  5'- gGUGGCgAUCUCCG-CGCuCGUgagaCGCUGCCg -3'
miRNA:   3'- -UACUG-UAGGGGCgGCG-GCG----GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 58407 0.66 0.634398
Target:  5'- --aGCAgCUCCGCCGgCGacgauuUCGCCGCCu -3'
miRNA:   3'- uacUGUaGGGGCGGCgGC------GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 201077 0.66 0.634398
Target:  5'- -gGuCGUCCCCGUCGCC-CCGUCc-- -3'
miRNA:   3'- uaCuGUAGGGGCGGCGGcGGCGGcgg -5'
15692 5' -64.7 NC_004065.1 + 133591 0.66 0.634398
Target:  5'- cUG-UAUCCagguauauaaguCCGCCG-UGCCGCCGCUc -3'
miRNA:   3'- uACuGUAGG------------GGCGGCgGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 64807 0.66 0.634398
Target:  5'- gAUGACcgcGUCCagcugugugUCGCCGUCG-CGCCGCa -3'
miRNA:   3'- -UACUG---UAGG---------GGCGGCGGCgGCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.