miRNA display CGI


Results 21 - 40 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 124641 0.66 0.619322
Target:  5'- --cGCcUCCUCGCCgGCCGucagcgaguccggguCCGCCGUCa -3'
miRNA:   3'- uacUGuAGGGGCGG-CGGC---------------GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 130359 0.66 0.624975
Target:  5'- -gGACGcUgUCGgCGCCG-CGCCGCCg -3'
miRNA:   3'- uaCUGUaGgGGCgGCGGCgGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 172069 0.66 0.596757
Target:  5'- ----gGUCCuCCGUgGCCGCCGCgGUUc -3'
miRNA:   3'- uacugUAGG-GGCGgCGGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 44788 0.66 0.612732
Target:  5'- -aGGCAgCgCCGCCaCCGUccccgguaacaucgCGCCGCCg -3'
miRNA:   3'- uaCUGUaGgGGCGGcGGCG--------------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 19556 0.66 0.60991
Target:  5'- gAUGACG--CCCGUCGCCGgacgguccagaucccCCGUCGCg -3'
miRNA:   3'- -UACUGUagGGGCGGCGGC---------------GGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 24413 0.66 0.624975
Target:  5'- -aGAUGUagaUCuuGCCGCUGCUGCCGaCg -3'
miRNA:   3'- uaCUGUA---GGggCGGCGGCGGCGGCgG- -5'
15692 5' -64.7 NC_004065.1 + 124374 0.66 0.615556
Target:  5'- -aGAUGUCCCCGgUGUCGaUCGCgGCg -3'
miRNA:   3'- uaCUGUAGGGGCgGCGGC-GGCGgCGg -5'
15692 5' -64.7 NC_004065.1 + 114018 0.66 0.606148
Target:  5'- ----gGUCgUCUGCCGCCGCgGCUGUCc -3'
miRNA:   3'- uacugUAG-GGGCGGCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 21138 0.66 0.615556
Target:  5'- -gGAU-UCCCCagcGCCGCgGCCGUgucgcuCGCCu -3'
miRNA:   3'- uaCUGuAGGGG---CGGCGgCGGCG------GCGG- -5'
15692 5' -64.7 NC_004065.1 + 77463 0.66 0.606148
Target:  5'- cGUGGcCAUCgCCGUgcggGgCGCCGCCGCg -3'
miRNA:   3'- -UACU-GUAGgGGCGg---CgGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 188884 0.66 0.606148
Target:  5'- uGUGguACGUgCUCGCCGCCGgCgacacgGUCGCCg -3'
miRNA:   3'- -UAC--UGUAgGGGCGGCGGCgG------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 100551 0.66 0.634398
Target:  5'- -----uUCUCUGCCGCCGCUGgUGCg -3'
miRNA:   3'- uacuguAGGGGCGGCGGCGGCgGCGg -5'
15692 5' -64.7 NC_004065.1 + 44924 0.66 0.596757
Target:  5'- -cGACcaucgCUUCGUCGCCGacgaCGCCGUCg -3'
miRNA:   3'- uaCUGua---GGGGCGGCGGCg---GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 128582 0.66 0.638167
Target:  5'- -cGACGUCggcggcgaaggcgcaUCCGCaCG-CGCCaGCCGCCc -3'
miRNA:   3'- uaCUGUAG---------------GGGCG-GCgGCGG-CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 122472 0.66 0.593943
Target:  5'- gGUGGCGUCCcgguagcgcacgacCCGCagcuggGCgGUCGCCGCg -3'
miRNA:   3'- -UACUGUAGG--------------GGCGg-----CGgCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 189851 0.66 0.615556
Target:  5'- -gGACcUgCUCGUCGCCGCgagggguuUGCUGCCg -3'
miRNA:   3'- uaCUGuAgGGGCGGCGGCG--------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 109450 0.66 0.615556
Target:  5'- -aGAgG-CCgaGgCGCCGCCGCCgGCCu -3'
miRNA:   3'- uaCUgUaGGggCgGCGGCGGCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 134234 0.66 0.606148
Target:  5'- -gGGCAcgggCCCCgGCCGCCGauauaggcuugcCCGuCCGCg -3'
miRNA:   3'- uaCUGUa---GGGG-CGGCGGC------------GGC-GGCGg -5'
15692 5' -64.7 NC_004065.1 + 47368 0.66 0.596757
Target:  5'- -aGACcguacuccacaGUCCagCGCgGCCGCCGUCGgCa -3'
miRNA:   3'- uaCUG-----------UAGGg-GCGgCGGCGGCGGCgG- -5'
15692 5' -64.7 NC_004065.1 + 39962 0.66 0.640993
Target:  5'- cUGuACGuuUCCCCgacGCCGuuGacggugucuguacaCCGCCGCCa -3'
miRNA:   3'- uAC-UGU--AGGGG---CGGCggC--------------GGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.