miRNA display CGI


Results 61 - 80 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 114259 0.67 0.559465
Target:  5'- -cGcCAaCCCUGCCGCCuCCGCUuucccgGCCg -3'
miRNA:   3'- uaCuGUaGGGGCGGCGGcGGCGG------CGG- -5'
15692 5' -64.7 NC_004065.1 + 93329 0.67 0.550236
Target:  5'- cGUGGCGgauaaaagCUCgaGCCGgcCCGCCGCCgGCCa -3'
miRNA:   3'- -UACUGUa-------GGGg-CGGC--GGCGGCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 76768 0.67 0.550236
Target:  5'- -cGuCAUCgUCCGgCGCauCGCCGCCGCg -3'
miRNA:   3'- uaCuGUAG-GGGCgGCG--GCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 153192 0.67 0.578045
Target:  5'- -gGAgAUCUCCucgucgauuuGCCGCgGCggcagCGCCGCCg -3'
miRNA:   3'- uaCUgUAGGGG----------CGGCGgCG-----GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 63807 0.67 0.578045
Target:  5'- -aGaACGUCUCCGCCGCCaccaagaacacGCuCGCgGCg -3'
miRNA:   3'- uaC-UGUAGGGGCGGCGG-----------CG-GCGgCGg -5'
15692 5' -64.7 NC_004065.1 + 118350 0.67 0.578045
Target:  5'- -aGACG-CCaugggCGCCGCCGUCGCgGUg -3'
miRNA:   3'- uaCUGUaGGg----GCGGCGGCGGCGgCGg -5'
15692 5' -64.7 NC_004065.1 + 130278 0.67 0.578045
Target:  5'- aGUGACAgucuaUCUCuauCGCCgGCuCGUCGCUGCCu -3'
miRNA:   3'- -UACUGU-----AGGG---GCGG-CG-GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 35830 0.67 0.578045
Target:  5'- -cGACG-CCaCCGauuCCGCCuGUgGCCGCCu -3'
miRNA:   3'- uaCUGUaGG-GGC---GGCGG-CGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 67527 0.67 0.578045
Target:  5'- --uGCGUCUCCGCCguGCCGUUgaacgGCCGCg -3'
miRNA:   3'- uacUGUAGGGGCGG--CGGCGG-----CGGCGg -5'
15692 5' -64.7 NC_004065.1 + 211084 0.67 0.550236
Target:  5'- -cGcACGUCCauauaGCUGCUGcCCGCCGUCu -3'
miRNA:   3'- uaC-UGUAGGgg---CGGCGGC-GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 114919 0.67 0.556692
Target:  5'- -gGAUAUCCcaagcgcaCCGCCggugaucaucaucaGUCGgCGCCGCCg -3'
miRNA:   3'- uaCUGUAGG--------GGCGG--------------CGGCgGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 169545 0.67 0.55854
Target:  5'- -aGACG-CCgCCGCCGUcucgguuucugcgCGCUGuuGCCg -3'
miRNA:   3'- uaCUGUaGG-GGCGGCG-------------GCGGCggCGG- -5'
15692 5' -64.7 NC_004065.1 + 32811 0.67 0.559465
Target:  5'- -cGuCGUCCUCGuaGCCGUCggGCCGCUc -3'
miRNA:   3'- uaCuGUAGGGGCggCGGCGG--CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 223281 0.67 0.559465
Target:  5'- -gGACcgaCCCGagUGCCGCCGCgGCUa -3'
miRNA:   3'- uaCUGuagGGGCg-GCGGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 193374 0.67 0.559465
Target:  5'- -gGACAaagUCUCUGCUucuGCCGCC-CUGCCu -3'
miRNA:   3'- uaCUGU---AGGGGCGG---CGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 113090 0.67 0.559465
Target:  5'- -cGACA-CCCCGuuGuUCGCCaCCGUCu -3'
miRNA:   3'- uaCUGUaGGGGCggC-GGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 110853 0.67 0.559465
Target:  5'- -gGGCcgCCCgCGUCGaaCCGUCGCCauGCCg -3'
miRNA:   3'- uaCUGuaGGG-GCGGC--GGCGGCGG--CGG- -5'
15692 5' -64.7 NC_004065.1 + 54642 0.67 0.559465
Target:  5'- -gGGgAUCgUCGuCCGCCuGCUGCCGCa -3'
miRNA:   3'- uaCUgUAGgGGC-GGCGG-CGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 83418 0.67 0.559465
Target:  5'- -aGACAcggCCCCGCCGaCgGCC-CCgaugGCCa -3'
miRNA:   3'- uaCUGUa--GGGGCGGC-GgCGGcGG----CGG- -5'
15692 5' -64.7 NC_004065.1 + 114160 0.67 0.55854
Target:  5'- -cGACGcUUCCCgggacucugaggaGCgCGCCGCCGgCCGCg -3'
miRNA:   3'- uaCUGU-AGGGG-------------CG-GCGGCGGC-GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.