miRNA display CGI


Results 81 - 100 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 29498 0.67 0.577113
Target:  5'- -aGGCGUUCCagguacucggugaCGCCGgCGCUGCaGCCg -3'
miRNA:   3'- uaCUGUAGGG-------------GCGGCgGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 136199 0.67 0.568736
Target:  5'- -aGAguUCCgCGCCGUCaccaGCCaGUCGCCg -3'
miRNA:   3'- uaCUguAGGgGCGGCGG----CGG-CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 99947 0.67 0.568736
Target:  5'- -cGGCAUCgCCGuaGUCGaCCaCCGCCg -3'
miRNA:   3'- uaCUGUAGgGGCggCGGC-GGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 93392 0.67 0.568736
Target:  5'- ----gAUCCaCGCCGCUccgGaCCGCCGCCu -3'
miRNA:   3'- uacugUAGGgGCGGCGG---C-GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 74654 0.67 0.568736
Target:  5'- cUGAgGUCCggaCCGCgGCgCGuCCGCCGUa -3'
miRNA:   3'- uACUgUAGG---GGCGgCG-GC-GGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 126326 0.67 0.568736
Target:  5'- -aGGCGcUCCCCGCCGCC-Ca-CCGUg -3'
miRNA:   3'- uaCUGU-AGGGGCGGCGGcGgcGGCGg -5'
15692 5' -64.7 NC_004065.1 + 54088 0.67 0.568736
Target:  5'- -cGGCAgagCCagagccauauaCGCCGCCGUcauCGCCGCg -3'
miRNA:   3'- uaCUGUa--GGg----------GCGGCGGCG---GCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 93329 0.67 0.550236
Target:  5'- cGUGGCGgauaaaagCUCgaGCCGgcCCGCCGCCgGCCa -3'
miRNA:   3'- -UACUGUa-------GGGg-CGGC--GGCGGCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 114160 0.67 0.55854
Target:  5'- -cGACGcUUCCCgggacucugaggaGCgCGCCGCCGgCCGCg -3'
miRNA:   3'- uaCUGU-AGGGG-------------CG-GCGGCGGC-GGCGg -5'
15692 5' -64.7 NC_004065.1 + 174848 0.67 0.587387
Target:  5'- gGUGGCGugcuUCCuaGCggggGUCGCCGCCGCg -3'
miRNA:   3'- -UACUGU----AGGggCGg---CGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 161282 0.67 0.559465
Target:  5'- -cGACcggCCCCuGCaCGUCGauGCCGCCu -3'
miRNA:   3'- uaCUGua-GGGG-CG-GCGGCggCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 130278 0.67 0.578045
Target:  5'- aGUGACAgucuaUCUCuauCGCCgGCuCGUCGCUGCCu -3'
miRNA:   3'- -UACUGU-----AGGG---GCGG-CG-GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 223281 0.67 0.559465
Target:  5'- -gGACcgaCCCGagUGCCGCCGCgGCUa -3'
miRNA:   3'- uaCUGuagGGGCg-GCGGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 114202 0.67 0.586452
Target:  5'- -cGGCGUCUCCGUcccagcccccgagCGCCGC-GUCGUCg -3'
miRNA:   3'- uaCUGUAGGGGCG-------------GCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 169849 0.67 0.568736
Target:  5'- cGUGACGgcCCCCGCgaaccgGCCGgaGCCGCg -3'
miRNA:   3'- -UACUGUa-GGGGCGg-----CGGCggCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 84084 0.67 0.541055
Target:  5'- uUGAgCAUCUCCGCCGuCCGUUucugGUCGCg -3'
miRNA:   3'- uACU-GUAGGGGCGGC-GGCGG----CGGCGg -5'
15692 5' -64.7 NC_004065.1 + 103791 0.67 0.541055
Target:  5'- -gGugAUCUCCGCgagCGCCGC-GCCGUUc -3'
miRNA:   3'- uaCugUAGGGGCG---GCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 211084 0.67 0.550236
Target:  5'- -cGcACGUCCauauaGCUGCUGcCCGCCGUCu -3'
miRNA:   3'- uaC-UGUAGGgg---CGGCGGC-GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 114919 0.67 0.556692
Target:  5'- -gGAUAUCCcaagcgcaCCGCCggugaucaucaucaGUCGgCGCCGCCg -3'
miRNA:   3'- uaCUGUAGG--------GGCGG--------------CGGCgGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 169545 0.67 0.55854
Target:  5'- -aGACG-CCgCCGCCGUcucgguuucugcgCGCUGuuGCCg -3'
miRNA:   3'- uaCUGUaGG-GGCGGCG-------------GCGGCggCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.