Results 101 - 120 of 374 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15692 | 5' | -64.7 | NC_004065.1 | + | 152033 | 0.67 | 0.578045 |
Target: 5'- -gGACGUCCauGCCG-CGCUGCaCGUCc -3' miRNA: 3'- uaCUGUAGGggCGGCgGCGGCG-GCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 153192 | 0.67 | 0.578045 |
Target: 5'- -gGAgAUCUCCucgucgauuuGCCGCgGCggcagCGCCGCCg -3' miRNA: 3'- uaCUgUAGGGG----------CGGCGgCG-----GCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 118612 | 0.67 | 0.578045 |
Target: 5'- gGUGAaaucgAUCCagaCGCCGaCGCCGaCGCCa -3' miRNA: 3'- -UACUg----UAGGg--GCGGCgGCGGCgGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 114202 | 0.67 | 0.586452 |
Target: 5'- -cGGCGUCUCCGUcccagcccccgagCGCCGC-GUCGUCg -3' miRNA: 3'- uaCUGUAGGGGCG-------------GCGGCGgCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 63807 | 0.67 | 0.578045 |
Target: 5'- -aGaACGUCUCCGCCGCCaccaagaacacGCuCGCgGCg -3' miRNA: 3'- uaC-UGUAGGGGCGGCGG-----------CG-GCGgCGg -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 130737 | 0.67 | 0.587387 |
Target: 5'- gAUGAgCAUCUCCauGgUGCCGuCCGgCGCCa -3' miRNA: 3'- -UACU-GUAGGGG--CgGCGGC-GGCgGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 91917 | 0.67 | 0.559465 |
Target: 5'- -aGGCGacCCCCGUCGUcaucgCGCCGCUGUUg -3' miRNA: 3'- uaCUGUa-GGGGCGGCG-----GCGGCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 161282 | 0.67 | 0.559465 |
Target: 5'- -cGACcggCCCCuGCaCGUCGauGCCGCCu -3' miRNA: 3'- uaCUGua-GGGG-CG-GCGGCggCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 25860 | 0.67 | 0.550236 |
Target: 5'- -cGGCAggCCCCaucgagaucgGCCuGCUGCUcaGCCGCCu -3' miRNA: 3'- uaCUGUa-GGGG----------CGG-CGGCGG--CGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 135648 | 0.67 | 0.568736 |
Target: 5'- -cGACAg-CUCGCCGCgGCCGUaaCGCg -3' miRNA: 3'- uaCUGUagGGGCGGCGgCGGCG--GCGg -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 138212 | 0.67 | 0.581778 |
Target: 5'- -cGACGUCUCgaccgCGCucugcgaugucgaggCGCuCGCCGCCGUCg -3' miRNA: 3'- uaCUGUAGGG-----GCG---------------GCG-GCGGCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 115023 | 0.67 | 0.586452 |
Target: 5'- -aGACAUCUcgcagauCCG-CGCgGCCGCCaggGCCg -3' miRNA: 3'- uaCUGUAGG-------GGCgGCGgCGGCGG---CGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 175509 | 0.67 | 0.587387 |
Target: 5'- -aGACAgaaCgCGuCCGCCGaaagaguaaCGCCGCCa -3' miRNA: 3'- uaCUGUag-GgGC-GGCGGCg--------GCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 26387 | 0.67 | 0.587387 |
Target: 5'- -gGGCGUUCCCcauGCCcCCGCCuccaacuCCGCCa -3' miRNA: 3'- uaCUGUAGGGG---CGGcGGCGGc------GGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 207637 | 0.67 | 0.587387 |
Target: 5'- -gGACAgcUCCauGCCGCaCGCgGCCGgCu -3' miRNA: 3'- uaCUGU--AGGggCGGCG-GCGgCGGCgG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 136199 | 0.67 | 0.568736 |
Target: 5'- -aGAguUCCgCGCCGUCaccaGCCaGUCGCCg -3' miRNA: 3'- uaCUguAGGgGCGGCGG----CGG-CGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 29498 | 0.67 | 0.577113 |
Target: 5'- -aGGCGUUCCagguacucggugaCGCCGgCGCUGCaGCCg -3' miRNA: 3'- uaCUGUAGGG-------------GCGGCgGCGGCGgCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 169849 | 0.67 | 0.568736 |
Target: 5'- cGUGACGgcCCCCGCgaaccgGCCGgaGCCGCg -3' miRNA: 3'- -UACUGUa-GGGGCGg-----CGGCggCGGCGg -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 115143 | 0.68 | 0.522852 |
Target: 5'- gAUGGCcUCggaaCCGCCGgccggcggcaCCGUCGUCGCCa -3' miRNA: 3'- -UACUGuAGg---GGCGGC----------GGCGGCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 19867 | 0.68 | 0.522852 |
Target: 5'- aAUGGCGUgcuagagaCCCUGauccaCC-CCGUCGCCGCCg -3' miRNA: 3'- -UACUGUA--------GGGGC-----GGcGGCGGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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