Results 121 - 140 of 374 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15692 | 5' | -64.7 | NC_004065.1 | + | 75579 | 0.68 | 0.513839 |
Target: 5'- cGUGACGUUCgUGUCGCCGgCggggggagGCCGCUg -3' miRNA: 3'- -UACUGUAGGgGCGGCGGCgG--------CGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 91431 | 0.68 | 0.496009 |
Target: 5'- -cGGCGcUUCCGCgGCCGUCGCCuGCg -3' miRNA: 3'- uaCUGUaGGGGCGgCGGCGGCGG-CGg -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 80414 | 0.68 | 0.487199 |
Target: 5'- uGUGAguUCgggCCCGUCGUCaGCCGCCucuGCCg -3' miRNA: 3'- -UACUguAG---GGGCGGCGG-CGGCGG---CGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 28338 | 0.68 | 0.531925 |
Target: 5'- -gGGCcuGUCCgCGUugUGCCGCCGCaGCCu -3' miRNA: 3'- uaCUG--UAGGgGCG--GCGGCGGCGgCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 170683 | 0.68 | 0.50489 |
Target: 5'- -cGGCGUCCuUCGUCGauCCGCCGCaGCUa -3' miRNA: 3'- uaCUGUAGG-GGCGGC--GGCGGCGgCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 190031 | 0.68 | 0.50489 |
Target: 5'- -cGACAUCCCC-CCgggguuucuggGgCGCC-CCGCCg -3' miRNA: 3'- uaCUGUAGGGGcGG-----------CgGCGGcGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 77003 | 0.68 | 0.496009 |
Target: 5'- gAUGACGaggCCGCCGgCGCCG-CGCCc -3' miRNA: 3'- -UACUGUaggGGCGGCgGCGGCgGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 151688 | 0.68 | 0.487199 |
Target: 5'- -cGACGUCgCCGUcgaacgcgaCGUCGUcgCGCCGCCu -3' miRNA: 3'- uaCUGUAGgGGCG---------GCGGCG--GCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 65255 | 0.68 | 0.50489 |
Target: 5'- cAUGAUcUCCCUGCaCGCCacguaccgcacgGCCGCgGCg -3' miRNA: 3'- -UACUGuAGGGGCG-GCGG------------CGGCGgCGg -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 91609 | 0.68 | 0.513839 |
Target: 5'- -cGGCGUCCUgaccgCGCCGCagaaGUCGCgGUCg -3' miRNA: 3'- uaCUGUAGGG-----GCGGCGg---CGGCGgCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 223111 | 0.68 | 0.513839 |
Target: 5'- -aGGcCGUgCCCGCaGCUGaaGCCGCCg -3' miRNA: 3'- uaCU-GUAgGGGCGgCGGCggCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 62676 | 0.68 | 0.513839 |
Target: 5'- -cGGCGaCCCUGuCUGCCGCCGCguugguCGCg -3' miRNA: 3'- uaCUGUaGGGGC-GGCGGCGGCG------GCGg -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 135168 | 0.68 | 0.520142 |
Target: 5'- gAUGACGacgagggacugCCCgagggacuguugggCGCCGCCGCCGaCgGCCc -3' miRNA: 3'- -UACUGUa----------GGG--------------GCGGCGGCGGC-GgCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 51503 | 0.68 | 0.522852 |
Target: 5'- cAUGAC-UCCCCuGUCGUaggccaugacgaCGCCGUCGCg -3' miRNA: 3'- -UACUGuAGGGG-CGGCG------------GCGGCGGCGg -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 56703 | 0.68 | 0.522852 |
Target: 5'- -cGACucuUCUCCGCCGCaGCgGCgGCg -3' miRNA: 3'- uaCUGu--AGGGGCGGCGgCGgCGgCGg -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 70023 | 0.68 | 0.522852 |
Target: 5'- cUGAacUCCCUGCUGgCGUCGCuCGUCa -3' miRNA: 3'- uACUguAGGGGCGGCgGCGGCG-GCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 115143 | 0.68 | 0.522852 |
Target: 5'- gAUGGCcUCggaaCCGCCGgccggcggcaCCGUCGUCGCCa -3' miRNA: 3'- -UACUGuAGg---GGCGGC----------GGCGGCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 19867 | 0.68 | 0.522852 |
Target: 5'- aAUGGCGUgcuagagaCCCUGauccaCC-CCGUCGCCGCCg -3' miRNA: 3'- -UACUGUA--------GGGGC-----GGcGGCGGCGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 225611 | 0.68 | 0.522852 |
Target: 5'- --aGCGUCaggCCCGCCGUgGCCaCCGCUc -3' miRNA: 3'- uacUGUAG---GGGCGGCGgCGGcGGCGG- -5' |
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15692 | 5' | -64.7 | NC_004065.1 | + | 99448 | 0.68 | 0.531015 |
Target: 5'- -cGACAUCgcgcgccucgCCCGCgauugcagaaaguUGCCGUCGCUGUCg -3' miRNA: 3'- uaCUGUAG----------GGGCG-------------GCGGCGGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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