miRNA display CGI


Results 101 - 120 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 88422 0.72 0.284262
Target:  5'- -cGGCAgcggagCCCGCCGCCGUCGCguugguggcgguCGCCu -3'
miRNA:   3'- uaCUGUag----GGGCGGCGGCGGCG------------GCGG- -5'
15692 5' -64.7 NC_004065.1 + 6121 0.72 0.290446
Target:  5'- -gGAacCAUCa-CGCCGCCGCCGCCaGCUc -3'
miRNA:   3'- uaCU--GUAGggGCGGCGGCGGCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 59971 0.72 0.322946
Target:  5'- -cGACgGUCgCCGUgCGCCGCgGCCGCUc -3'
miRNA:   3'- uaCUG-UAGgGGCG-GCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 127913 0.72 0.322946
Target:  5'- cGUGaACAUggUCCCGCCGCCcUCGgCGCCg -3'
miRNA:   3'- -UAC-UGUA--GGGGCGGCGGcGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 82246 0.72 0.303129
Target:  5'- -gGGCGccuUCCCCGCCGCCGaaaaCGUCGaCg -3'
miRNA:   3'- uaCUGU---AGGGGCGGCGGCg---GCGGCgG- -5'
15692 5' -64.7 NC_004065.1 + 30331 0.72 0.303129
Target:  5'- cUGGCcucgcuUCCaCCGCCGCCaucaacgauaacGCUGCCGCUg -3'
miRNA:   3'- uACUGu-----AGG-GGCGGCGG------------CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 97023 0.72 0.316234
Target:  5'- -aGACggCCgcgaugCCGCCuCCGCCGUCGCCc -3'
miRNA:   3'- uaCUGuaGG------GGCGGcGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 128818 0.72 0.296735
Target:  5'- -cGACGUCgCUGCCGCUGCgGgCGCa -3'
miRNA:   3'- uaCUGUAGgGGCGGCGGCGgCgGCGg -5'
15692 5' -64.7 NC_004065.1 + 109490 0.72 0.284262
Target:  5'- -cGACG-CCgcuaCCGCCGCCGucucCCGUCGCCg -3'
miRNA:   3'- uaCUGUaGG----GGCGGCGGC----GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 103555 0.72 0.284262
Target:  5'- -cGACcgCUgaGCCuGCCGCCGCgGCCu -3'
miRNA:   3'- uaCUGuaGGggCGG-CGGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 20980 0.72 0.284262
Target:  5'- -cGugAUCgCCGUCGUCGCCGUCgguGCCg -3'
miRNA:   3'- uaCugUAGgGGCGGCGGCGGCGG---CGG- -5'
15692 5' -64.7 NC_004065.1 + 74610 0.71 0.329762
Target:  5'- gGUGGCggccgaGUUCCCGgaaCCGCCGCCaCCGCUa -3'
miRNA:   3'- -UACUG------UAGGGGC---GGCGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 150695 0.71 0.350845
Target:  5'- ---uCGUCUCCGCgCGCaCGaaCCGCCGCCg -3'
miRNA:   3'- uacuGUAGGGGCG-GCG-GC--GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 130070 0.71 0.350845
Target:  5'- -cGGCGUUUCgcaGCagcaGCCGCCGCCGCg -3'
miRNA:   3'- uaCUGUAGGGg--CGg---CGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 77961 0.71 0.358082
Target:  5'- cGUGACGUcgagCCCCgagacgcugGCCGCgGCgaGCCGCCc -3'
miRNA:   3'- -UACUGUA----GGGG---------CGGCGgCGg-CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 195422 0.71 0.343712
Target:  5'- -cGuACGcUCCCGCCGCguCGCCGUCGUCg -3'
miRNA:   3'- uaC-UGUaGGGGCGGCG--GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 190832 0.71 0.341593
Target:  5'- -cGACA-CCgUGCgcgagaaauaaccaCGCCGCCGCCGUCg -3'
miRNA:   3'- uaCUGUaGGgGCG--------------GCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 36378 0.71 0.336685
Target:  5'- -cGcUAUCgUCGCucuCGCUGCCGCCGCCa -3'
miRNA:   3'- uaCuGUAGgGGCG---GCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 76393 0.71 0.336685
Target:  5'- -gGAUGagCUCGCCGCCGUccgaguggCGCCGCCc -3'
miRNA:   3'- uaCUGUagGGGCGGCGGCG--------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 115461 0.71 0.329762
Target:  5'- -cGGCGguaugCCCCGUCGCgGCgGCCacgGCCg -3'
miRNA:   3'- uaCUGUa----GGGGCGGCGgCGgCGG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.