miRNA display CGI


Results 1 - 20 of 374 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 35879 1.09 0.000772
Target:  5'- gAUGACAUCCCCGCCGCCGCCGCCGCCg -3'
miRNA:   3'- -UACUGUAGGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 58057 0.91 0.014219
Target:  5'- -cGACccCUCCGCCGCCGCCGCCGCCa -3'
miRNA:   3'- uaCUGuaGGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 159687 0.9 0.017424
Target:  5'- -aGGCGcUCCUCGCCGCCGUCGCCGCCg -3'
miRNA:   3'- uaCUGU-AGGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 67932 0.88 0.026804
Target:  5'- gAUGGagggCCCGCCGCCGCCGCCGCCg -3'
miRNA:   3'- -UACUguagGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 65643 0.87 0.02749
Target:  5'- cUGACGgaCCCGCUGCCGCUGCCGCCg -3'
miRNA:   3'- uACUGUagGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 154413 0.87 0.02749
Target:  5'- --aACAgCCgCCGCCGCCGCCGCCGCCa -3'
miRNA:   3'- uacUGUaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 152566 0.87 0.031187
Target:  5'- -cGucauCGUCCCCGCCGgcaCCGCCGCCGCCg -3'
miRNA:   3'- uaCu---GUAGGGGCGGC---GGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 30234 0.87 0.031983
Target:  5'- -cGAUA-CCaCUGCCGCCGCCGCCGCCg -3'
miRNA:   3'- uaCUGUaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 56977 0.85 0.038143
Target:  5'- -aGACAgCUgCUGCCGCCGCCGCCGCCg -3'
miRNA:   3'- uaCUGUaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 154273 0.85 0.038143
Target:  5'- gAUGACAaCgUCGCCGCCGCCGCCGCg -3'
miRNA:   3'- -UACUGUaGgGGCGGCGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 168818 0.85 0.040007
Target:  5'- -aGACGcccgcugUCgCCGCCGCCGCCGCUGCCa -3'
miRNA:   3'- uaCUGU-------AGgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 128668 0.85 0.040107
Target:  5'- gGUGGCggCgCCGCCGCCGCUGCCGCUc -3'
miRNA:   3'- -UACUGuaGgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 24591 0.85 0.044337
Target:  5'- cGUGuCGUCgCCGCCaCCGCCGCCGCCg -3'
miRNA:   3'- -UACuGUAGgGGCGGcGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 113702 0.84 0.046613
Target:  5'- -cGACG-CCgUCGCCGCUGCCGCCGCCg -3'
miRNA:   3'- uaCUGUaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 197704 0.84 0.046613
Target:  5'- -cGACGUCCgaCGCCGUCGCgGCCGCCg -3'
miRNA:   3'- uaCUGUAGGg-GCGGCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 149234 0.84 0.051511
Target:  5'- --uGCcgCCgCCGCCGCCGCCGUCGCCu -3'
miRNA:   3'- uacUGuaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 26615 0.83 0.055509
Target:  5'- ---gUAUCCCCGCCGCCGUCGCCagcGCCg -3'
miRNA:   3'- uacuGUAGGGGCGGCGGCGGCGG---CGG- -5'
15692 5' -64.7 NC_004065.1 + 48367 0.83 0.056907
Target:  5'- -cGAgGUCCcaCCGCCGCCGCCaccGCCGCCg -3'
miRNA:   3'- uaCUgUAGG--GGCGGCGGCGG---CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 70371 0.83 0.059808
Target:  5'- -cGAUcggCgCCGCCGCCGCCGCUGCCg -3'
miRNA:   3'- uaCUGua-GgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 98152 0.82 0.062851
Target:  5'- gGUGAUAgUCgCCGCCGCCaCCGCCGCCu -3'
miRNA:   3'- -UACUGU-AGgGGCGGCGGcGGCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.