miRNA display CGI


Results 21 - 40 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 62344 0.82 0.066043
Target:  5'- -cGACcgCCgCUGCCGCUGCCGUCGCCc -3'
miRNA:   3'- uaCUGuaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 163901 0.81 0.072903
Target:  5'- --uGCcUCCgCUGCCGCUGCCGCCGCCg -3'
miRNA:   3'- uacUGuAGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 164686 0.81 0.080444
Target:  5'- -cGACccaCCCgcagcugcUGCCGCCGCCGCCGCCg -3'
miRNA:   3'- uaCUGua-GGG--------GCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 127398 0.81 0.080444
Target:  5'- -gGGCgAUCgCCGCCGCCgguagcGCCGCCGCCg -3'
miRNA:   3'- uaCUG-UAGgGGCGGCGG------CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 57758 0.81 0.082443
Target:  5'- -aGAgAUCgUCGUCGCCGCCGCCGUCg -3'
miRNA:   3'- uaCUgUAGgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 225651 0.81 0.082443
Target:  5'- -cGGC--UCCCGCCGCCGCCGUCGCg -3'
miRNA:   3'- uaCUGuaGGGGCGGCGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 166407 0.8 0.086583
Target:  5'- -aGACGUCggcgCCGCUGCCGCCGgCGCCg -3'
miRNA:   3'- uaCUGUAGg---GGCGGCGGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 135126 0.8 0.090921
Target:  5'- -cGACAgUUCUCGUCGCCGCCGCCGUg -3'
miRNA:   3'- uaCUGU-AGGGGCGGCGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 45191 0.8 0.090921
Target:  5'- -cGACAggggCaacaCGCCGCCGCUGCCGCCa -3'
miRNA:   3'- uaCUGUa---Ggg--GCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 129020 0.79 0.09998
Target:  5'- -cGACGgcgCCCUcaacgcuGCCGCUGCCGCUGCCg -3'
miRNA:   3'- uaCUGUa--GGGG-------CGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 151380 0.79 0.102686
Target:  5'- -cGGCGUUgCCGCCGCCuucGCUGCUGCCg -3'
miRNA:   3'- uaCUGUAGgGGCGGCGG---CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 71942 0.79 0.107782
Target:  5'- -gGACGcgccgCuCCCGuuGCCGCCGCCGCUg -3'
miRNA:   3'- uaCUGUa----G-GGGCggCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 149318 0.79 0.107782
Target:  5'- -cGACGaCCCCgaucggccuGCCGCCGCCGUCGUCg -3'
miRNA:   3'- uaCUGUaGGGG---------CGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 24795 0.79 0.107782
Target:  5'- -gGGCucGUCUCCGCUGCCgucgucgcuGCCGCCGCCa -3'
miRNA:   3'- uaCUG--UAGGGGCGGCGG---------CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 100904 0.79 0.110418
Target:  5'- -cGACgugcgaGUCCCUGUucuCGCCGCUGCCGCCg -3'
miRNA:   3'- uaCUG------UAGGGGCG---GCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 135398 0.79 0.113115
Target:  5'- -cGACGUCCCCGUCGUCaucacCCGCCGCg -3'
miRNA:   3'- uaCUGUAGGGGCGGCGGc----GGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 122243 0.79 0.113115
Target:  5'- -gGuCGUUCCUGUCGCCGCUGCUGCCc -3'
miRNA:   3'- uaCuGUAGGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 97685 0.79 0.113115
Target:  5'- uGUGAUAcUCgCgGUCGCUGCCGCCGCCg -3'
miRNA:   3'- -UACUGU-AGgGgCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 146451 0.78 0.118694
Target:  5'- -cGGCuUCCCCGCCGUCGCCGUCuacuccguGCCc -3'
miRNA:   3'- uaCUGuAGGGGCGGCGGCGGCGG--------CGG- -5'
15692 5' -64.7 NC_004065.1 + 52542 0.78 0.118694
Target:  5'- -cGGCggCCCCGCCGUgCGCCcCCGCCg -3'
miRNA:   3'- uaCUGuaGGGGCGGCG-GCGGcGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.