miRNA display CGI


Results 41 - 60 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 62918 0.78 0.121578
Target:  5'- -aGACAgggUCgCCGCUGCCGucuCCGCCGCCa -3'
miRNA:   3'- uaCUGU---AGgGGCGGCGGC---GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 62636 0.78 0.130627
Target:  5'- -cGcCAcCCCCGCCGCCaccaccCCGCCGCCa -3'
miRNA:   3'- uaCuGUaGGGGCGGCGGc-----GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 27749 0.78 0.132826
Target:  5'- cUGAUGaCCCCGCCGCgcaucgagacgcugCGCCGCCGUCu -3'
miRNA:   3'- uACUGUaGGGGCGGCG--------------GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 99995 0.78 0.133779
Target:  5'- -cGuCGUCUUCGUCguaGCCGCCGCCGCCg -3'
miRNA:   3'- uaCuGUAGGGGCGG---CGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 110416 0.78 0.133779
Target:  5'- -cGGCGUCUCCuCCGCCGCCGgCGUCc -3'
miRNA:   3'- uaCUGUAGGGGcGGCGGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 45796 0.78 0.133779
Target:  5'- -gGGCggCUgCCGCCGCCGCCGCggCGCCg -3'
miRNA:   3'- uaCUGuaGG-GGCGGCGGCGGCG--GCGG- -5'
15692 5' -64.7 NC_004065.1 + 96531 0.78 0.133779
Target:  5'- cGUGACG-CCCCugGCCGCC-CCGCCGUCc -3'
miRNA:   3'- -UACUGUaGGGG--CGGCGGcGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 109912 0.77 0.140293
Target:  5'- -cGGC-UCgUCCGCCGCgGCCGCCGUCg -3'
miRNA:   3'- uaCUGuAG-GGGCGGCGgCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 81164 0.77 0.141631
Target:  5'- ------cCCCCGCCGCCGCCuccucgaucgcggcgGCCGCCu -3'
miRNA:   3'- uacuguaGGGGCGGCGGCGG---------------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 90169 0.77 0.143659
Target:  5'- -cGGC-UCCgCCGCCuCCGCCGUCGCCc -3'
miRNA:   3'- uaCUGuAGG-GGCGGcGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 117458 0.77 0.154202
Target:  5'- -cGuCGUCCggcuCCGCgGCCGCuCGCCGCCa -3'
miRNA:   3'- uaCuGUAGG----GGCGgCGGCG-GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 76056 0.76 0.160483
Target:  5'- cGUGcCAggugCCUCGCCGCCGCucccccucgccgacCGCCGCCu -3'
miRNA:   3'- -UACuGUa---GGGGCGGCGGCG--------------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 64467 0.76 0.161237
Target:  5'- ----uGUCCUCGCCGCCGacacugccuccgcCCGCCGCCu -3'
miRNA:   3'- uacugUAGGGGCGGCGGC-------------GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 122080 0.76 0.161615
Target:  5'- -aGACAUCCCCGCCaCCuCCGuCCGCa -3'
miRNA:   3'- uaCUGUAGGGGCGGcGGcGGC-GGCGg -5'
15692 5' -64.7 NC_004065.1 + 27216 0.76 0.165441
Target:  5'- uUGGCGagCUCCGgagcCCGCCGCgGCCGCCg -3'
miRNA:   3'- uACUGUa-GGGGC----GGCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 25123 0.76 0.165441
Target:  5'- -cGACuuugCCaCCgucgagGCCGCCGUCGCCGCCa -3'
miRNA:   3'- uaCUGua--GG-GG------CGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 86694 0.76 0.165441
Target:  5'- ---cUcgCCCUGCCGCCGCCcCCGCCc -3'
miRNA:   3'- uacuGuaGGGGCGGCGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 48905 0.76 0.173337
Target:  5'- -----cUCCCCGCCGCCGCCaccCCGUCa -3'
miRNA:   3'- uacuguAGGGGCGGCGGCGGc--GGCGG- -5'
15692 5' -64.7 NC_004065.1 + 75735 0.76 0.17741
Target:  5'- cUGA--UCCUCGCCGCCGCCaUCGCCc -3'
miRNA:   3'- uACUguAGGGGCGGCGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 163425 0.76 0.17741
Target:  5'- -cGGCAaCgCCGCgGUgGCCGCCGCCg -3'
miRNA:   3'- uaCUGUaGgGGCGgCGgCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.