miRNA display CGI


Results 61 - 80 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 200806 0.76 0.17741
Target:  5'- ----uGUUCCCGCUGCCGcCCGUCGCCc -3'
miRNA:   3'- uacugUAGGGGCGGCGGC-GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 68424 0.76 0.181568
Target:  5'- -cGACAgCUCCGUCGCgcgCGCCGCCGCg -3'
miRNA:   3'- uaCUGUaGGGGCGGCG---GCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 151175 0.76 0.181568
Target:  5'- -cGACAa-CCCGCCGgaGCCGCCGUCg -3'
miRNA:   3'- uaCUGUagGGGCGGCggCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 88266 0.75 0.185812
Target:  5'- -cGuCGUCCCC-CCGCaCGUCGUCGCCg -3'
miRNA:   3'- uaCuGUAGGGGcGGCG-GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 1165 0.75 0.185812
Target:  5'- -gGugGUCCCCauugugucGUCGgCGCCGCUGCCg -3'
miRNA:   3'- uaCugUAGGGG--------CGGCgGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 27645 0.75 0.190143
Target:  5'- -cGACGaUgCCGCCGCUGCUGCUGCUg -3'
miRNA:   3'- uaCUGUaGgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 58008 0.75 0.190143
Target:  5'- uUGuuAUCUuuGCCGCUuCCGCCGCCa -3'
miRNA:   3'- uACugUAGGggCGGCGGcGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 24338 0.75 0.193227
Target:  5'- -gGACGUCCUCggcaucaucaucgaGCCGCUcauGCUGCCGCCg -3'
miRNA:   3'- uaCUGUAGGGG--------------CGGCGG---CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 170249 0.75 0.194563
Target:  5'- -cGGUAUCguggCCGUgGCCGCCGCCGCCa -3'
miRNA:   3'- uaCUGUAGg---GGCGgCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 135297 0.75 0.203208
Target:  5'- --cGCGUCUCCGCCGCCGaCUucggcccgcucgaGCCGCCc -3'
miRNA:   3'- uacUGUAGGGGCGGCGGC-GG-------------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 43843 0.75 0.203672
Target:  5'- -----uUCCuaCCGuuGCCGCCGCCGCCc -3'
miRNA:   3'- uacuguAGG--GGCggCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 110167 0.75 0.20789
Target:  5'- -gGACGucuUCCCCgaccucugcggcgGCCGCgacgCGCCGCCGCCc -3'
miRNA:   3'- uaCUGU---AGGGG-------------CGGCG----GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 120817 0.75 0.208364
Target:  5'- -gGAgGUCccgCCCGCucgCGCCGaCCGCCGCCg -3'
miRNA:   3'- uaCUgUAG---GGGCG---GCGGC-GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 128486 0.75 0.208364
Target:  5'- cUGcCAgCgCCGCUGCUGCUGCCGCCu -3'
miRNA:   3'- uACuGUaGgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 152923 0.74 0.228072
Target:  5'- ----uGUCCCuCG-CGCCGUCGCCGCCg -3'
miRNA:   3'- uacugUAGGG-GCgGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 32539 0.74 0.232718
Target:  5'- gAUGACggCCCCGUCG-CGCCGgcgguauCCGCCg -3'
miRNA:   3'- -UACUGuaGGGGCGGCgGCGGC-------GGCGG- -5'
15692 5' -64.7 NC_004065.1 + 78854 0.74 0.232718
Target:  5'- -gGugGUCgaccucuuuucugCCCGCCGUCGCUGuuGCCa -3'
miRNA:   3'- uaCugUAG-------------GGGCGGCGGCGGCggCGG- -5'
15692 5' -64.7 NC_004065.1 + 97613 0.74 0.233239
Target:  5'- -aGGCcgCCgCCGCUGCCGaagaGCCGCCc -3'
miRNA:   3'- uaCUGuaGG-GGCGGCGGCgg--CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 62578 0.74 0.238505
Target:  5'- aGUGACAgcagcagCCaguagguuagCGCCGCCGCCcCCGCCg -3'
miRNA:   3'- -UACUGUa------GGg---------GCGGCGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 30189 0.74 0.243869
Target:  5'- --aACAUCCCCGaaGCCGUCGUagCGCCu -3'
miRNA:   3'- uacUGUAGGGGCggCGGCGGCG--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.