miRNA display CGI


Results 81 - 100 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 109870 0.74 0.243869
Target:  5'- -gGGCGgugCCaCCGgCGUCGCCGCgGCCg -3'
miRNA:   3'- uaCUGUa--GG-GGCgGCGGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 73713 0.73 0.254899
Target:  5'- -----cUCCuCCGCCGCCGCUGCuggCGCCa -3'
miRNA:   3'- uacuguAGG-GGCGGCGGCGGCG---GCGG- -5'
15692 5' -64.7 NC_004065.1 + 163761 0.73 0.259995
Target:  5'- -cGACGUUCUUccgaagaauugaaGCCGCCGCCaccggcGCCGCCg -3'
miRNA:   3'- uaCUGUAGGGG-------------CGGCGGCGG------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 138816 0.73 0.260566
Target:  5'- -gGACGgcaCCGUCGCCGucaguCCGCCGCCg -3'
miRNA:   3'- uaCUGUaggGGCGGCGGC-----GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 42991 0.73 0.272207
Target:  5'- --cGCAUCaCCucagaCGCCG-CGCCGCCGCCa -3'
miRNA:   3'- uacUGUAG-GG-----GCGGCgGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 142261 0.73 0.276379
Target:  5'- -cGACGUCgucgacgaUCCGCCGCgguaucgucgucauCGCCGUCGCCu -3'
miRNA:   3'- uaCUGUAG--------GGGCGGCG--------------GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 201055 0.73 0.27758
Target:  5'- ----gAUCCCCGCgccgagaCGCCGUCGCcCGCCa -3'
miRNA:   3'- uacugUAGGGGCG-------GCGGCGGCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 68838 0.73 0.278182
Target:  5'- -cGGCGcUCUggaUCGCCGCCGCCGCguugcuCGCCa -3'
miRNA:   3'- uaCUGU-AGG---GGCGGCGGCGGCG------GCGG- -5'
15692 5' -64.7 NC_004065.1 + 128152 0.73 0.278182
Target:  5'- cUGGCGUUacgCUCGCCggGCCGCCaGCCGCUg -3'
miRNA:   3'- uACUGUAG---GGGCGG--CGGCGG-CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 88422 0.72 0.284262
Target:  5'- -cGGCAgcggagCCCGCCGCCGUCGCguugguggcgguCGCCu -3'
miRNA:   3'- uaCUGUag----GGGCGGCGGCGGCG------------GCGG- -5'
15692 5' -64.7 NC_004065.1 + 109490 0.72 0.284262
Target:  5'- -cGACG-CCgcuaCCGCCGCCGucucCCGUCGCCg -3'
miRNA:   3'- uaCUGUaGG----GGCGGCGGC----GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 20980 0.72 0.284262
Target:  5'- -cGugAUCgCCGUCGUCGCCGUCgguGCCg -3'
miRNA:   3'- uaCugUAGgGGCGGCGGCGGCGG---CGG- -5'
15692 5' -64.7 NC_004065.1 + 103555 0.72 0.284262
Target:  5'- -cGACcgCUgaGCCuGCCGCCGCgGCCu -3'
miRNA:   3'- uaCUGuaGGggCGG-CGGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 76366 0.72 0.290446
Target:  5'- -cGAUcUCCaucgCGCCGgCGCCGCCGCg -3'
miRNA:   3'- uaCUGuAGGg---GCGGCgGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 114319 0.72 0.290446
Target:  5'- gAUGucCAUCCUgGCgGCCGCCGCgaaacagaaCGCCg -3'
miRNA:   3'- -UACu-GUAGGGgCGgCGGCGGCG---------GCGG- -5'
15692 5' -64.7 NC_004065.1 + 6121 0.72 0.290446
Target:  5'- -gGAacCAUCa-CGCCGCCGCCGCCaGCUc -3'
miRNA:   3'- uaCU--GUAGggGCGGCGGCGGCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 201033 0.72 0.290446
Target:  5'- -cGGCG-CCUCGCCaCCGCCGCCGg- -3'
miRNA:   3'- uaCUGUaGGGGCGGcGGCGGCGGCgg -5'
15692 5' -64.7 NC_004065.1 + 97006 0.72 0.290446
Target:  5'- -cGACGUCU--GCUGCCGCUGCUGCUa -3'
miRNA:   3'- uaCUGUAGGggCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 173872 0.72 0.290446
Target:  5'- -aGGCG-CCgucaCGCCguguguguggGCCGCCGCCGCCu -3'
miRNA:   3'- uaCUGUaGGg---GCGG----------CGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 221267 0.72 0.296735
Target:  5'- -gGAUAUgaaCCCUGCCGCCGCCaCCacgGCCu -3'
miRNA:   3'- uaCUGUA---GGGGCGGCGGCGGcGG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.