miRNA display CGI


Results 101 - 120 of 374 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 221267 0.72 0.296735
Target:  5'- -gGAUAUgaaCCCUGCCGCCGCCaCCacgGCCu -3'
miRNA:   3'- uaCUGUA---GGGGCGGCGGCGGcGG---CGG- -5'
15692 5' -64.7 NC_004065.1 + 30331 0.72 0.303129
Target:  5'- cUGGCcucgcuUCCaCCGCCGCCaucaacgauaacGCUGCCGCUg -3'
miRNA:   3'- uACUGu-----AGG-GGCGGCGG------------CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 82246 0.72 0.303129
Target:  5'- -gGGCGccuUCCCCGCCGCCGaaaaCGUCGaCg -3'
miRNA:   3'- uaCUGU---AGGGGCGGCGGCg---GCGGCgG- -5'
15692 5' -64.7 NC_004065.1 + 114435 0.72 0.309629
Target:  5'- -aGuauCAUCuCCCGCCGCCaccaccaCCGCCGUCu -3'
miRNA:   3'- uaCu--GUAG-GGGCGGCGGc------GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 90103 0.72 0.309629
Target:  5'- -aGACGaaguucaaCCCGCUGgCGCCGCCgGCCg -3'
miRNA:   3'- uaCUGUag------GGGCGGCgGCGGCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 97023 0.72 0.316234
Target:  5'- -aGACggCCgcgaugCCGCCuCCGCCGUCGCCc -3'
miRNA:   3'- uaCUGuaGG------GGCGGcGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 124316 0.72 0.322946
Target:  5'- -gGAUGUCgUgGuUCGCCGUCGCCGCCa -3'
miRNA:   3'- uaCUGUAGgGgC-GGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 127469 0.72 0.322946
Target:  5'- ----gAUCCUCGCgGCCGCCGCUcCCg -3'
miRNA:   3'- uacugUAGGGGCGgCGGCGGCGGcGG- -5'
15692 5' -64.7 NC_004065.1 + 59971 0.72 0.322946
Target:  5'- -cGACgGUCgCCGUgCGCCGCgGCCGCUc -3'
miRNA:   3'- uaCUG-UAGgGGCG-GCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 48727 0.72 0.322946
Target:  5'- -cGACGUCCUCGuguCCGUCGUagcaguagaUGCCGCCg -3'
miRNA:   3'- uaCUGUAGGGGC---GGCGGCG---------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 127913 0.72 0.322946
Target:  5'- cGUGaACAUggUCCCGCCGCCcUCGgCGCCg -3'
miRNA:   3'- -UAC-UGUA--GGGGCGGCGGcGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 115461 0.71 0.329762
Target:  5'- -cGGCGguaugCCCCGUCGCgGCgGCCacgGCCg -3'
miRNA:   3'- uaCUGUa----GGGGCGGCGgCGgCGG---CGG- -5'
15692 5' -64.7 NC_004065.1 + 74610 0.71 0.329762
Target:  5'- gGUGGCggccgaGUUCCCGgaaCCGCCGCCaCCGCUa -3'
miRNA:   3'- -UACUG------UAGGGGC---GGCGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 76393 0.71 0.336685
Target:  5'- -gGAUGagCUCGCCGCCGUccgaguggCGCCGCCc -3'
miRNA:   3'- uaCUGUagGGGCGGCGGCG--------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 36378 0.71 0.336685
Target:  5'- -cGcUAUCgUCGCucuCGCUGCCGCCGCCa -3'
miRNA:   3'- uaCuGUAGgGGCG---GCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 62721 0.71 0.336685
Target:  5'- -cGGCcgCuCCUGCCGUCGCCGgUGCUu -3'
miRNA:   3'- uaCUGuaG-GGGCGGCGGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 27023 0.71 0.336685
Target:  5'- uGUGAaucauaAUCUCCGUCGUCGUCGUCGUCc -3'
miRNA:   3'- -UACUg-----UAGGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 118425 0.71 0.336685
Target:  5'- -cGGCAgCCgUGaCgGCCGCCGCCGCg -3'
miRNA:   3'- uaCUGUaGGgGC-GgCGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 190832 0.71 0.341593
Target:  5'- -cGACA-CCgUGCgcgagaaauaaccaCGCCGCCGCCGUCg -3'
miRNA:   3'- uaCUGUaGGgGCG--------------GCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 163423 0.71 0.341593
Target:  5'- cAUG-CAUCCCUgGCCGCCgauccggacgacgaGCCGCUGUCc -3'
miRNA:   3'- -UACuGUAGGGG-CGGCGG--------------CGGCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.