miRNA display CGI


Results 121 - 140 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 195422 0.71 0.343712
Target:  5'- -cGuACGcUCCCGCCGCguCGCCGUCGUCg -3'
miRNA:   3'- uaC-UGUaGGGGCGGCG--GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 116400 0.71 0.343712
Target:  5'- -cGACccggCCCCgaGCCGCCGCaggaCGCCGaCCa -3'
miRNA:   3'- uaCUGua--GGGG--CGGCGGCG----GCGGC-GG- -5'
15692 5' -64.7 NC_004065.1 + 26688 0.71 0.343712
Target:  5'- cAUGGCuuguaugugCUCUcggagGCCGCCGCCGCCGUg -3'
miRNA:   3'- -UACUGua-------GGGG-----CGGCGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 150695 0.71 0.350845
Target:  5'- ---uCGUCUCCGCgCGCaCGaaCCGCCGCCg -3'
miRNA:   3'- uacuGUAGGGGCG-GCG-GC--GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 130070 0.71 0.350845
Target:  5'- -cGGCGUUUCgcaGCagcaGCCGCCGCCGCg -3'
miRNA:   3'- uaCUGUAGGGg--CGg---CGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 77961 0.71 0.358082
Target:  5'- cGUGACGUcgagCCCCgagacgcugGCCGCgGCgaGCCGCCc -3'
miRNA:   3'- -UACUGUA----GGGG---------CGGCGgCGg-CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 176446 0.71 0.365423
Target:  5'- -aGAC-UCUgaaacagcugCCuCCGCCGCCGUCGCCa -3'
miRNA:   3'- uaCUGuAGG----------GGcGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 147683 0.71 0.365423
Target:  5'- uUGGCGUCCaugaCGCCGUCG-UGCUGCUg -3'
miRNA:   3'- uACUGUAGGg---GCGGCGGCgGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 127630 0.7 0.372868
Target:  5'- cGUGcACcgCUCgCGCUGCCGCUGCggCGCCg -3'
miRNA:   3'- -UAC-UGuaGGG-GCGGCGGCGGCG--GCGG- -5'
15692 5' -64.7 NC_004065.1 + 43412 0.7 0.372868
Target:  5'- cUGcCGUUCCCGCCGuCCGugcgcgugucuuCCGCgGCCg -3'
miRNA:   3'- uACuGUAGGGGCGGC-GGC------------GGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 31359 0.7 0.375874
Target:  5'- -gGugGUgCCUGCCcgcuccacccuggcgGCCaagGCCGCCGCCa -3'
miRNA:   3'- uaCugUAgGGGCGG---------------CGG---CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 115313 0.7 0.380415
Target:  5'- --cGCGUCCUCG-CGCgCGCCGuuGCCc -3'
miRNA:   3'- uacUGUAGGGGCgGCG-GCGGCggCGG- -5'
15692 5' -64.7 NC_004065.1 + 108581 0.7 0.380415
Target:  5'- -aGAUGcCCCCGUCGCC-CCGCaCGCUu -3'
miRNA:   3'- uaCUGUaGGGGCGGCGGcGGCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 31153 0.7 0.380415
Target:  5'- -gGGCAUCgacaCCGCCGCgGCCGgaGCUa -3'
miRNA:   3'- uaCUGUAGg---GGCGGCGgCGGCggCGG- -5'
15692 5' -64.7 NC_004065.1 + 17692 0.7 0.380415
Target:  5'- -cGcCAUCgCCGUgGCCGUCGUCGUCg -3'
miRNA:   3'- uaCuGUAGgGGCGgCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 153964 0.7 0.380415
Target:  5'- -cGACuuGUCUgCGCCGUCGCgGUCGUCg -3'
miRNA:   3'- uaCUG--UAGGgGCGGCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 125126 0.7 0.380415
Target:  5'- -cGGCAccaCCgCGCCGUCGCCcaGCCGCg -3'
miRNA:   3'- uaCUGUa--GGgGCGGCGGCGG--CGGCGg -5'
15692 5' -64.7 NC_004065.1 + 115185 0.7 0.380415
Target:  5'- gAUGGCccuggaUCCgGCCGUgGCCGCCGCg -3'
miRNA:   3'- -UACUGua----GGGgCGGCGgCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 96911 0.7 0.383461
Target:  5'- -gGGCGagCCCGCCGaCGCCGagaaagagcucgcgaCCGCCg -3'
miRNA:   3'- uaCUGUagGGGCGGCgGCGGC---------------GGCGG- -5'
15692 5' -64.7 NC_004065.1 + 78627 0.7 0.387293
Target:  5'- -cGACcgaCCCGCCuCCGCCacccaagagaucgGCCGCCa -3'
miRNA:   3'- uaCUGuagGGGCGGcGGCGG-------------CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.