miRNA display CGI


Results 21 - 40 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 133591 0.66 0.634398
Target:  5'- cUG-UAUCCagguauauaaguCCGCCG-UGCCGCCGCUc -3'
miRNA:   3'- uACuGUAGG------------GGCGGCgGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 132081 0.66 0.634398
Target:  5'- ----gGUCCCCaCCGCUGCCa-CGCCg -3'
miRNA:   3'- uacugUAGGGGcGGCGGCGGcgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 100551 0.66 0.634398
Target:  5'- -----uUCUCUGCCGCCGCUGgUGCg -3'
miRNA:   3'- uacuguAGGGGCGGCGGCGGCgGCGg -5'
15692 5' -64.7 NC_004065.1 + 88453 0.66 0.628743
Target:  5'- -gGACcUCCCCGCCcccucGacuccuucuccuuucCCGuCCGCCGCUc -3'
miRNA:   3'- uaCUGuAGGGGCGG-----C---------------GGC-GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 172881 0.66 0.624975
Target:  5'- -cGGCAgauUCCgUGCCGUCGCCGUgauCGUUg -3'
miRNA:   3'- uaCUGU---AGGgGCGGCGGCGGCG---GCGG- -5'
15692 5' -64.7 NC_004065.1 + 24413 0.66 0.624975
Target:  5'- -aGAUGUagaUCuuGCCGCUGCUGCCGaCg -3'
miRNA:   3'- uaCUGUA---GGggCGGCGGCGGCGGCgG- -5'
15692 5' -64.7 NC_004065.1 + 145677 0.66 0.624975
Target:  5'- -cGAU-UCCCuaagCGCCGCCGCCGagaGUCu -3'
miRNA:   3'- uaCUGuAGGG----GCGGCGGCGGCgg-CGG- -5'
15692 5' -64.7 NC_004065.1 + 20025 0.66 0.624975
Target:  5'- uUGACuccggCUCCGUCGCCcacacccCCGCaCGCCc -3'
miRNA:   3'- uACUGua---GGGGCGGCGGc------GGCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 172336 0.66 0.624975
Target:  5'- --uACGUcCCCCGCuCGaaCCGCgGCgGCCa -3'
miRNA:   3'- uacUGUA-GGGGCG-GC--GGCGgCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 110141 0.66 0.624975
Target:  5'- -gGACc-CCCCGaCGCgGCCGCggcgaCGCCg -3'
miRNA:   3'- uaCUGuaGGGGCgGCGgCGGCG-----GCGG- -5'
15692 5' -64.7 NC_004065.1 + 90014 0.66 0.624975
Target:  5'- gAUGAUAUCCUCGCCGgUGaUCG-CGUCg -3'
miRNA:   3'- -UACUGUAGGGGCGGCgGC-GGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 162738 0.66 0.624975
Target:  5'- aGUGGCGcUCCUCGUCcugGCCgGCCGCgcgaggccuuCGCCg -3'
miRNA:   3'- -UACUGU-AGGGGCGG---CGG-CGGCG----------GCGG- -5'
15692 5' -64.7 NC_004065.1 + 130359 0.66 0.624975
Target:  5'- -gGACGcUgUCGgCGCCG-CGCCGCCg -3'
miRNA:   3'- uaCUGUaGgGGCgGCGGCgGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 41354 0.66 0.624975
Target:  5'- cUGACGa--CCGUCGucucCCGCCGCgCGCCc -3'
miRNA:   3'- uACUGUaggGGCGGC----GGCGGCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 124641 0.66 0.619322
Target:  5'- --cGCcUCCUCGCCgGCCGucagcgaguccggguCCGCCGUCa -3'
miRNA:   3'- uacUGuAGGGGCGG-CGGC---------------GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 21138 0.66 0.615556
Target:  5'- -gGAU-UCCCCagcGCCGCgGCCGUgucgcuCGCCu -3'
miRNA:   3'- uaCUGuAGGGG---CGGCGgCGGCG------GCGG- -5'
15692 5' -64.7 NC_004065.1 + 109450 0.66 0.615556
Target:  5'- -aGAgG-CCgaGgCGCCGCCGCCgGCCu -3'
miRNA:   3'- uaCUgUaGGggCgGCGGCGGCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 18628 0.66 0.615556
Target:  5'- --cACGUuucCCCCGCCuCCGCCaccucuGCCGUCu -3'
miRNA:   3'- uacUGUA---GGGGCGGcGGCGG------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 189851 0.66 0.615556
Target:  5'- -gGACcUgCUCGUCGCCGCgagggguuUGCUGCCg -3'
miRNA:   3'- uaCUGuAgGGGCGGCGGCG--------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 124374 0.66 0.615556
Target:  5'- -aGAUGUCCCCGgUGUCGaUCGCgGCg -3'
miRNA:   3'- uaCUGUAGGGGCgGCGGC-GGCGgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.