miRNA display CGI


Results 41 - 60 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 44788 0.66 0.612732
Target:  5'- -aGGCAgCgCCGCCaCCGUccccgguaacaucgCGCCGCCg -3'
miRNA:   3'- uaCUGUaGgGGCGGcGGCG--------------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 19556 0.66 0.60991
Target:  5'- gAUGACG--CCCGUCGCCGgacgguccagaucccCCGUCGCg -3'
miRNA:   3'- -UACUGUagGGGCGGCGGC---------------GGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 134234 0.66 0.606148
Target:  5'- -gGGCAcgggCCCCgGCCGCCGauauaggcuugcCCGuCCGCg -3'
miRNA:   3'- uaCUGUa---GGGG-CGGCGGC------------GGC-GGCGg -5'
15692 5' -64.7 NC_004065.1 + 114018 0.66 0.606148
Target:  5'- ----gGUCgUCUGCCGCCGCgGCUGUCc -3'
miRNA:   3'- uacugUAG-GGGCGGCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 60803 0.66 0.606148
Target:  5'- -cGGCGUCUCCGUCGUCuCCGgCGgCu -3'
miRNA:   3'- uaCUGUAGGGGCGGCGGcGGCgGCgG- -5'
15692 5' -64.7 NC_004065.1 + 77463 0.66 0.606148
Target:  5'- cGUGGcCAUCgCCGUgcggGgCGCCGCCGCg -3'
miRNA:   3'- -UACU-GUAGgGGCGg---CgGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 188884 0.66 0.606148
Target:  5'- uGUGguACGUgCUCGCCGCCGgCgacacgGUCGCCg -3'
miRNA:   3'- -UAC--UGUAgGGGCGGCGGCgG------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 75929 0.66 0.606148
Target:  5'- -cGGCcaagaAUCagCCCGCgGCCGCC-UCGCCg -3'
miRNA:   3'- uaCUG-----UAG--GGGCGgCGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 9284 0.66 0.606148
Target:  5'- -aGACGUCgCacaCGCCGaCCGCgauCGCCGUg -3'
miRNA:   3'- uaCUGUAG-Gg--GCGGC-GGCG---GCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 61847 0.66 0.606148
Target:  5'- -aGGCGUCg-CGCCGCUGUCG-CGCCc -3'
miRNA:   3'- uaCUGUAGggGCGGCGGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 64138 0.66 0.596757
Target:  5'- -gGGCuucUCCUC-CCGCUgGCCGCCGaCCu -3'
miRNA:   3'- uaCUGu--AGGGGcGGCGG-CGGCGGC-GG- -5'
15692 5' -64.7 NC_004065.1 + 47368 0.66 0.596757
Target:  5'- -aGACcguacuccacaGUCCagCGCgGCCGCCGUCGgCa -3'
miRNA:   3'- uaCUG-----------UAGGg-GCGgCGGCGGCGGCgG- -5'
15692 5' -64.7 NC_004065.1 + 110956 0.66 0.596757
Target:  5'- --aACAUCCUCGUcaccuccaccuuCGCCGUCGUCaGCCu -3'
miRNA:   3'- uacUGUAGGGGCG------------GCGGCGGCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 131878 0.66 0.596757
Target:  5'- uUGAUGUUgCaCGCgaugCGCacCGCCGCCGCCu -3'
miRNA:   3'- uACUGUAGgG-GCG----GCG--GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 172069 0.66 0.596757
Target:  5'- ----gGUCCuCCGUgGCCGCCGCgGUUc -3'
miRNA:   3'- uacugUAGG-GGCGgCGGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 44924 0.66 0.596757
Target:  5'- -cGACcaucgCUUCGUCGCCGacgaCGCCGUCg -3'
miRNA:   3'- uaCUGua---GGGGCGGCGGCg---GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 37766 0.66 0.596757
Target:  5'- cUGAgGUCCaCCGCUugGCgGagaGCCGCCa -3'
miRNA:   3'- uACUgUAGG-GGCGG--CGgCgg-CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 122472 0.66 0.593943
Target:  5'- gGUGGCGUCCcgguagcgcacgacCCGCagcuggGCgGUCGCCGCg -3'
miRNA:   3'- -UACUGUAGG--------------GGCGg-----CGgCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 78240 0.67 0.587387
Target:  5'- ---cCGUCCCgggGCgGCuCGCCGCgGCCa -3'
miRNA:   3'- uacuGUAGGGg--CGgCG-GCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 88976 0.67 0.587387
Target:  5'- -gGACGUgcucaUCCGCCGCuCG-CGCCGCg -3'
miRNA:   3'- uaCUGUAg----GGGCGGCG-GCgGCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.