miRNA display CGI


Results 61 - 80 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 207637 0.67 0.587387
Target:  5'- -gGACAgcUCCauGCCGCaCGCgGCCGgCu -3'
miRNA:   3'- uaCUGU--AGGggCGGCG-GCGgCGGCgG- -5'
15692 5' -64.7 NC_004065.1 + 130737 0.67 0.587387
Target:  5'- gAUGAgCAUCUCCauGgUGCCGuCCGgCGCCa -3'
miRNA:   3'- -UACU-GUAGGGG--CgGCGGC-GGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 175509 0.67 0.587387
Target:  5'- -aGACAgaaCgCGuCCGCCGaaagaguaaCGCCGCCa -3'
miRNA:   3'- uaCUGUag-GgGC-GGCGGCg--------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 174848 0.67 0.587387
Target:  5'- gGUGGCGugcuUCCuaGCggggGUCGCCGCCGCg -3'
miRNA:   3'- -UACUGU----AGGggCGg---CGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 78240 0.67 0.587387
Target:  5'- ---cCGUCCCgggGCgGCuCGCCGCgGCCa -3'
miRNA:   3'- uacuGUAGGGg--CGgCG-GCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 88976 0.67 0.587387
Target:  5'- -gGACGUgcucaUCCGCCGCuCG-CGCCGCg -3'
miRNA:   3'- uaCUGUAg----GGGCGGCG-GCgGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 78920 0.67 0.587387
Target:  5'- -gGGCG-CCgCGgCGCCgGCCGCUGCg -3'
miRNA:   3'- uaCUGUaGGgGCgGCGG-CGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 114202 0.67 0.586452
Target:  5'- -cGGCGUCUCCGUcccagcccccgagCGCCGC-GUCGUCg -3'
miRNA:   3'- uaCUGUAGGGGCG-------------GCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 115023 0.67 0.586452
Target:  5'- -aGACAUCUcgcagauCCG-CGCgGCCGCCaggGCCg -3'
miRNA:   3'- uaCUGUAGG-------GGCgGCGgCGGCGG---CGG- -5'
15692 5' -64.7 NC_004065.1 + 65566 0.67 0.586452
Target:  5'- gAUGugGUCCgCCGCCucgcugaacucGUcgaugcuucuggaCGCCGCgGCCg -3'
miRNA:   3'- -UACugUAGG-GGCGG-----------CG-------------GCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 138212 0.67 0.581778
Target:  5'- -cGACGUCUCgaccgCGCucugcgaugucgaggCGCuCGCCGCCGUCg -3'
miRNA:   3'- uaCUGUAGGG-----GCG---------------GCG-GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 153192 0.67 0.578045
Target:  5'- -gGAgAUCUCCucgucgauuuGCCGCgGCggcagCGCCGCCg -3'
miRNA:   3'- uaCUgUAGGGG----------CGGCGgCG-----GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 67527 0.67 0.578045
Target:  5'- --uGCGUCUCCGCCguGCCGUUgaacgGCCGCg -3'
miRNA:   3'- uacUGUAGGGGCGG--CGGCGG-----CGGCGg -5'
15692 5' -64.7 NC_004065.1 + 35830 0.67 0.578045
Target:  5'- -cGACG-CCaCCGauuCCGCCuGUgGCCGCCu -3'
miRNA:   3'- uaCUGUaGG-GGC---GGCGG-CGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 152033 0.67 0.578045
Target:  5'- -gGACGUCCauGCCG-CGCUGCaCGUCc -3'
miRNA:   3'- uaCUGUAGGggCGGCgGCGGCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 130278 0.67 0.578045
Target:  5'- aGUGACAgucuaUCUCuauCGCCgGCuCGUCGCUGCCu -3'
miRNA:   3'- -UACUGU-----AGGG---GCGG-CG-GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 118612 0.67 0.578045
Target:  5'- gGUGAaaucgAUCCagaCGCCGaCGCCGaCGCCa -3'
miRNA:   3'- -UACUg----UAGGg--GCGGCgGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 110751 0.67 0.578045
Target:  5'- -cGACAUCCuuGuCCGggGCgGCCGUCu -3'
miRNA:   3'- uaCUGUAGGggC-GGCggCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 63807 0.67 0.578045
Target:  5'- -aGaACGUCUCCGCCGCCaccaagaacacGCuCGCgGCg -3'
miRNA:   3'- uaC-UGUAGGGGCGGCGG-----------CG-GCGgCGg -5'
15692 5' -64.7 NC_004065.1 + 118350 0.67 0.578045
Target:  5'- -aGACG-CCaugggCGCCGCCGUCGCgGUg -3'
miRNA:   3'- uaCUGUaGGg----GCGGCGGCGGCGgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.