miRNA display CGI


Results 81 - 100 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 29498 0.67 0.577113
Target:  5'- -aGGCGUUCCagguacucggugaCGCCGgCGCUGCaGCCg -3'
miRNA:   3'- uaCUGUAGGG-------------GCGGCgGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 117419 0.67 0.568736
Target:  5'- -gGGCGgaCCCCGUCGgCGCUGUCgguGCCg -3'
miRNA:   3'- uaCUGUa-GGGGCGGCgGCGGCGG---CGG- -5'
15692 5' -64.7 NC_004065.1 + 169849 0.67 0.568736
Target:  5'- cGUGACGgcCCCCGCgaaccgGCCGgaGCCGCg -3'
miRNA:   3'- -UACUGUa-GGGGCGg-----CGGCggCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 54088 0.67 0.568736
Target:  5'- -cGGCAgagCCagagccauauaCGCCGCCGUcauCGCCGCg -3'
miRNA:   3'- uaCUGUa--GGg----------GCGGCGGCG---GCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 126326 0.67 0.568736
Target:  5'- -aGGCGcUCCCCGCCGCC-Ca-CCGUg -3'
miRNA:   3'- uaCUGU-AGGGGCGGCGGcGgcGGCGg -5'
15692 5' -64.7 NC_004065.1 + 74654 0.67 0.568736
Target:  5'- cUGAgGUCCggaCCGCgGCgCGuCCGCCGUa -3'
miRNA:   3'- uACUgUAGG---GGCGgCG-GC-GGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 93392 0.67 0.568736
Target:  5'- ----gAUCCaCGCCGCUccgGaCCGCCGCCu -3'
miRNA:   3'- uacugUAGGgGCGGCGG---C-GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 99947 0.67 0.568736
Target:  5'- -cGGCAUCgCCGuaGUCGaCCaCCGCCg -3'
miRNA:   3'- uaCUGUAGgGGCggCGGC-GGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 135648 0.67 0.568736
Target:  5'- -cGACAg-CUCGCCGCgGCCGUaaCGCg -3'
miRNA:   3'- uaCUGUagGGGCGGCGgCGGCG--GCGg -5'
15692 5' -64.7 NC_004065.1 + 136199 0.67 0.568736
Target:  5'- -aGAguUCCgCGCCGUCaccaGCCaGUCGCCg -3'
miRNA:   3'- uaCUguAGGgGCGGCGG----CGG-CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 27540 0.67 0.568736
Target:  5'- -aGACG-CgUCGUCGgCGgCGCCGCCg -3'
miRNA:   3'- uaCUGUaGgGGCGGCgGCgGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 32811 0.67 0.559465
Target:  5'- -cGuCGUCCUCGuaGCCGUCggGCCGCUc -3'
miRNA:   3'- uaCuGUAGGGGCggCGGCGG--CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 54642 0.67 0.559465
Target:  5'- -gGGgAUCgUCGuCCGCCuGCUGCCGCa -3'
miRNA:   3'- uaCUgUAGgGGC-GGCGG-CGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 110853 0.67 0.559465
Target:  5'- -gGGCcgCCCgCGUCGaaCCGUCGCCauGCCg -3'
miRNA:   3'- uaCUGuaGGG-GCGGC--GGCGGCGG--CGG- -5'
15692 5' -64.7 NC_004065.1 + 113090 0.67 0.559465
Target:  5'- -cGACA-CCCCGuuGuUCGCCaCCGUCu -3'
miRNA:   3'- uaCUGUaGGGGCggC-GGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 193374 0.67 0.559465
Target:  5'- -gGACAaagUCUCUGCUucuGCCGCC-CUGCCu -3'
miRNA:   3'- uaCUGU---AGGGGCGG---CGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 161282 0.67 0.559465
Target:  5'- -cGACcggCCCCuGCaCGUCGauGCCGCCu -3'
miRNA:   3'- uaCUGua-GGGG-CG-GCGGCggCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 223281 0.67 0.559465
Target:  5'- -gGACcgaCCCGagUGCCGCCGCgGCUa -3'
miRNA:   3'- uaCUGuagGGGCg-GCGGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 114259 0.67 0.559465
Target:  5'- -cGcCAaCCCUGCCGCCuCCGCUuucccgGCCg -3'
miRNA:   3'- uaCuGUaGGGGCGGCGGcGGCGG------CGG- -5'
15692 5' -64.7 NC_004065.1 + 83418 0.67 0.559465
Target:  5'- -aGACAcggCCCCGCCGaCgGCC-CCgaugGCCa -3'
miRNA:   3'- uaCUGUa--GGGGCGGC-GgCGGcGG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.