miRNA display CGI


Results 101 - 120 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 32811 0.67 0.559465
Target:  5'- -cGuCGUCCUCGuaGCCGUCggGCCGCUc -3'
miRNA:   3'- uaCuGUAGGGGCggCGGCGG--CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 169545 0.67 0.55854
Target:  5'- -aGACG-CCgCCGCCGUcucgguuucugcgCGCUGuuGCCg -3'
miRNA:   3'- uaCUGUaGG-GGCGGCG-------------GCGGCggCGG- -5'
15692 5' -64.7 NC_004065.1 + 114160 0.67 0.55854
Target:  5'- -cGACGcUUCCCgggacucugaggaGCgCGCCGCCGgCCGCg -3'
miRNA:   3'- uaCUGU-AGGGG-------------CG-GCGGCGGC-GGCGg -5'
15692 5' -64.7 NC_004065.1 + 114919 0.67 0.556692
Target:  5'- -gGAUAUCCcaagcgcaCCGCCggugaucaucaucaGUCGgCGCCGCCg -3'
miRNA:   3'- uaCUGUAGG--------GGCGG--------------CGGCgGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 43578 0.67 0.553922
Target:  5'- -gGGCGUCCCCGCCgggccagaugacgacGUCGUuuuUGUCGUCg -3'
miRNA:   3'- uaCUGUAGGGGCGG---------------CGGCG---GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 211084 0.67 0.550236
Target:  5'- -cGcACGUCCauauaGCUGCUGcCCGCCGUCu -3'
miRNA:   3'- uaC-UGUAGGgg---CGGCGGC-GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 93329 0.67 0.550236
Target:  5'- cGUGGCGgauaaaagCUCgaGCCGgcCCGCCGCCgGCCa -3'
miRNA:   3'- -UACUGUa-------GGGg-CGGC--GGCGGCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 76768 0.67 0.550236
Target:  5'- -cGuCAUCgUCCGgCGCauCGCCGCCGCg -3'
miRNA:   3'- uaCuGUAG-GGGCgGCG--GCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 98516 0.67 0.550236
Target:  5'- -aGGCGcgcgCCCaggGCCGCCGUCccgaGCCGUCg -3'
miRNA:   3'- uaCUGUa---GGGg--CGGCGGCGG----CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 56899 0.67 0.550236
Target:  5'- -cGACGgugaagggUGCCGCgGCCGCUGCCa -3'
miRNA:   3'- uaCUGUaggg----GCGGCGgCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 223478 0.67 0.550236
Target:  5'- -aGAagaCCgCGUCGCCGCUaCCGCCg -3'
miRNA:   3'- uaCUguaGGgGCGGCGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 25860 0.67 0.550236
Target:  5'- -cGGCAggCCCCaucgagaucgGCCuGCUGCUcaGCCGCCu -3'
miRNA:   3'- uaCUGUa-GGGG----------CGG-CGGCGG--CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 96269 0.67 0.550236
Target:  5'- -aGACGUUgguaCGCUGCgcaGCCGCCGUCg -3'
miRNA:   3'- uaCUGUAGgg--GCGGCGg--CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 103791 0.67 0.541055
Target:  5'- -gGugAUCUCCGCgagCGCCGC-GCCGUUc -3'
miRNA:   3'- uaCugUAGGGGCG---GCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 63468 0.67 0.541055
Target:  5'- -gGACGaCCCggugcaGCCGCCaGgCGCCGUCg -3'
miRNA:   3'- uaCUGUaGGGg-----CGGCGG-CgGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 84084 0.67 0.541055
Target:  5'- uUGAgCAUCUCCGCCGuCCGUUucugGUCGCg -3'
miRNA:   3'- uACU-GUAGGGGCGGC-GGCGG----CGGCGg -5'
15692 5' -64.7 NC_004065.1 + 36433 0.67 0.541055
Target:  5'- ---cCAUUCCUGCUGCCGUCGCuuCGUCc -3'
miRNA:   3'- uacuGUAGGGGCGGCGGCGGCG--GCGG- -5'
15692 5' -64.7 NC_004065.1 + 141926 0.67 0.541055
Target:  5'- -aGGC--UCCCGCaUGUCGUCGCUGCCc -3'
miRNA:   3'- uaCUGuaGGGGCG-GCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 28338 0.68 0.531925
Target:  5'- -gGGCcuGUCCgCGUugUGCCGCCGCaGCCu -3'
miRNA:   3'- uaCUG--UAGGgGCG--GCGGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 99814 0.68 0.531925
Target:  5'- cUGACGcaCCaCgGCCGuCCGCCGCgGCg -3'
miRNA:   3'- uACUGUa-GG-GgCGGC-GGCGGCGgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.