miRNA display CGI


Results 121 - 140 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 45379 0.68 0.531925
Target:  5'- -gGACgaGUCCgacgagUCGCCuUCGCCGCCGCUg -3'
miRNA:   3'- uaCUG--UAGG------GGCGGcGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 28338 0.68 0.531925
Target:  5'- -gGGCcuGUCCgCGUugUGCCGCCGCaGCCu -3'
miRNA:   3'- uaCUG--UAGGgGCG--GCGGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 99814 0.68 0.531925
Target:  5'- cUGACGcaCCaCgGCCGuCCGCCGCgGCg -3'
miRNA:   3'- uACUGUa-GG-GgCGGC-GGCGGCGgCGg -5'
15692 5' -64.7 NC_004065.1 + 199778 0.68 0.531925
Target:  5'- -aGGCG-CCCgGCUGCgCGCacguggcgGCCGCCg -3'
miRNA:   3'- uaCUGUaGGGgCGGCG-GCGg-------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 99448 0.68 0.531015
Target:  5'- -cGACAUCgcgcgccucgCCCGCgauugcagaaaguUGCCGUCGCUGUCg -3'
miRNA:   3'- uaCUGUAG----------GGGCG-------------GCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 18345 0.68 0.529198
Target:  5'- -aGAgAUgCCgGCCacgaggcugcggcgGUCGCUGCCGCCa -3'
miRNA:   3'- uaCUgUAgGGgCGG--------------CGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 69655 0.68 0.522852
Target:  5'- cUGGCG-CCCCGUCGgCaGCUGuuCCGCCa -3'
miRNA:   3'- uACUGUaGGGGCGGCgG-CGGC--GGCGG- -5'
15692 5' -64.7 NC_004065.1 + 62875 0.68 0.522852
Target:  5'- aAUG-CugcUgCCGCgGCUGCUGCCGCCg -3'
miRNA:   3'- -UACuGua-GgGGCGgCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 115143 0.68 0.522852
Target:  5'- gAUGGCcUCggaaCCGCCGgccggcggcaCCGUCGUCGCCa -3'
miRNA:   3'- -UACUGuAGg---GGCGGC----------GGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 19867 0.68 0.522852
Target:  5'- aAUGGCGUgcuagagaCCCUGauccaCC-CCGUCGCCGCCg -3'
miRNA:   3'- -UACUGUA--------GGGGC-----GGcGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 51503 0.68 0.522852
Target:  5'- cAUGAC-UCCCCuGUCGUaggccaugacgaCGCCGUCGCg -3'
miRNA:   3'- -UACUGuAGGGG-CGGCG------------GCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 56703 0.68 0.522852
Target:  5'- -cGACucuUCUCCGCCGCaGCgGCgGCg -3'
miRNA:   3'- uaCUGu--AGGGGCGGCGgCGgCGgCGg -5'
15692 5' -64.7 NC_004065.1 + 225611 0.68 0.522852
Target:  5'- --aGCGUCaggCCCGCCGUgGCCaCCGCUc -3'
miRNA:   3'- uacUGUAG---GGGCGGCGgCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 70023 0.68 0.522852
Target:  5'- cUGAacUCCCUGCUGgCGUCGCuCGUCa -3'
miRNA:   3'- uACUguAGGGGCGGCgGCGGCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 178985 0.68 0.520142
Target:  5'- --cACAccUCCCUcugcgaagagguauGCCGCCGCUGCCcCCa -3'
miRNA:   3'- uacUGU--AGGGG--------------CGGCGGCGGCGGcGG- -5'
15692 5' -64.7 NC_004065.1 + 135168 0.68 0.520142
Target:  5'- gAUGACGacgagggacugCCCgagggacuguugggCGCCGCCGCCGaCgGCCc -3'
miRNA:   3'- -UACUGUa----------GGG--------------GCGGCGGCGGC-GgCGG- -5'
15692 5' -64.7 NC_004065.1 + 136742 0.68 0.513839
Target:  5'- cUGGgGUCCa-GaCCGCCGgaGCCGCCg -3'
miRNA:   3'- uACUgUAGGggC-GGCGGCggCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 223111 0.68 0.513839
Target:  5'- -aGGcCGUgCCCGCaGCUGaaGCCGCCg -3'
miRNA:   3'- uaCU-GUAgGGGCGgCGGCggCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 75579 0.68 0.513839
Target:  5'- cGUGACGUUCgUGUCGCCGgCggggggagGCCGCUg -3'
miRNA:   3'- -UACUGUAGGgGCGGCGGCgG--------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 62676 0.68 0.513839
Target:  5'- -cGGCGaCCCUGuCUGCCGCCGCguugguCGCg -3'
miRNA:   3'- uaCUGUaGGGGC-GGCGGCGGCG------GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.