miRNA display CGI


Results 141 - 160 of 374 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 75579 0.68 0.513839
Target:  5'- cGUGACGUUCgUGUCGCCGgCggggggagGCCGCUg -3'
miRNA:   3'- -UACUGUAGGgGCGGCGGCgG--------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 113689 0.68 0.508462
Target:  5'- -cGGCGggCCCC-CCgGCCGCCGCUcugcgcagcucccugGCCa -3'
miRNA:   3'- uaCUGUa-GGGGcGG-CGGCGGCGG---------------CGG- -5'
15692 5' -64.7 NC_004065.1 + 56868 0.68 0.50489
Target:  5'- --cGCAUCCacauCCGCgGCCGCCuGCuCGCUc -3'
miRNA:   3'- uacUGUAGG----GGCGgCGGCGG-CG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 190031 0.68 0.50489
Target:  5'- -cGACAUCCCC-CCgggguuucuggGgCGCC-CCGCCg -3'
miRNA:   3'- uaCUGUAGGGGcGG-----------CgGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 170683 0.68 0.50489
Target:  5'- -cGGCGUCCuUCGUCGauCCGCCGCaGCUa -3'
miRNA:   3'- uaCUGUAGG-GGCGGC--GGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 63514 0.68 0.50489
Target:  5'- gAUGGCcucgCCCuCGCgGCCGUagauCGCCGCg -3'
miRNA:   3'- -UACUGua--GGG-GCGgCGGCG----GCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 104130 0.68 0.50489
Target:  5'- cAUGGCGagcggaUCCUCGUCGUCGCCuuCCGCg -3'
miRNA:   3'- -UACUGU------AGGGGCGGCGGCGGc-GGCGg -5'
15692 5' -64.7 NC_004065.1 + 110698 0.68 0.50489
Target:  5'- uGUGACGUga--GCCGCCGCCGCgacucgGCCg -3'
miRNA:   3'- -UACUGUAggggCGGCGGCGGCGg-----CGG- -5'
15692 5' -64.7 NC_004065.1 + 126894 0.68 0.50489
Target:  5'- cAUGAUcgCgUgaGCCGCCGUCGCCaacGCCg -3'
miRNA:   3'- -UACUGuaGgGg-CGGCGGCGGCGG---CGG- -5'
15692 5' -64.7 NC_004065.1 + 209662 0.68 0.50489
Target:  5'- cAUGAag-CCCgGCCGUCGaCGCCGUa -3'
miRNA:   3'- -UACUguaGGGgCGGCGGCgGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 65255 0.68 0.50489
Target:  5'- cAUGAUcUCCCUGCaCGCCacguaccgcacgGCCGCgGCg -3'
miRNA:   3'- -UACUGuAGGGGCG-GCGG------------CGGCGgCGg -5'
15692 5' -64.7 NC_004065.1 + 135816 0.68 0.50489
Target:  5'- gGUGACGgccgccUCCCCGUCGuCCGCcCGuCCGaCg -3'
miRNA:   3'- -UACUGU------AGGGGCGGC-GGCG-GC-GGCgG- -5'
15692 5' -64.7 NC_004065.1 + 127513 0.68 0.503108
Target:  5'- -cGuCGUCCuCUGCCGCCugcucaugggccCCGUCGCCg -3'
miRNA:   3'- uaCuGUAGG-GGCGGCGGc-----------GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 122794 0.68 0.496009
Target:  5'- gAUGAUGcuggCCCUGCUGUCGCuCGaCCGCUc -3'
miRNA:   3'- -UACUGUa---GGGGCGGCGGCG-GC-GGCGG- -5'
15692 5' -64.7 NC_004065.1 + 110439 0.68 0.496009
Target:  5'- -cGGCGg-CgCGUCGCgGCCGCCGCa -3'
miRNA:   3'- uaCUGUagGgGCGGCGgCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 197413 0.68 0.496009
Target:  5'- cUGGCGUCCCUggucgagagGCgCGCCGgcgagcguCUGCCGCUg -3'
miRNA:   3'- uACUGUAGGGG---------CG-GCGGC--------GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 77003 0.68 0.496009
Target:  5'- gAUGACGaggCCGCCGgCGCCG-CGCCc -3'
miRNA:   3'- -UACUGUaggGGCGGCgGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 96620 0.68 0.496009
Target:  5'- cUGACcccuucGUCCUCGUCGCCGgCgGUCGCg -3'
miRNA:   3'- uACUG------UAGGGGCGGCGGC-GgCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 96956 0.68 0.496009
Target:  5'- -----cUCCCCGuCUGCUGCCG-CGCCu -3'
miRNA:   3'- uacuguAGGGGC-GGCGGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 91431 0.68 0.496009
Target:  5'- -cGGCGcUUCCGCgGCCGUCGCCuGCg -3'
miRNA:   3'- uaCUGUaGGGGCGgCGGCGGCGG-CGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.