miRNA display CGI


Results 1 - 20 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 1165 0.75 0.185812
Target:  5'- -gGugGUCCCCauugugucGUCGgCGCCGCUGCCg -3'
miRNA:   3'- uaCugUAGGGG--------CGGCgGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 6121 0.72 0.290446
Target:  5'- -gGAacCAUCa-CGCCGCCGCCGCCaGCUc -3'
miRNA:   3'- uaCU--GUAGggGCGGCGGCGGCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 9284 0.66 0.606148
Target:  5'- -aGACGUCgCacaCGCCGaCCGCgauCGCCGUg -3'
miRNA:   3'- uaCUGUAG-Gg--GCGGC-GGCG---GCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 15537 0.66 0.634398
Target:  5'- -cGACcgUCCCGCaC-CCGCCuaCGCUa -3'
miRNA:   3'- uaCUGuaGGGGCG-GcGGCGGcgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 17692 0.7 0.380415
Target:  5'- -cGcCAUCgCCGUgGCCGUCGUCGUCg -3'
miRNA:   3'- uaCuGUAGgGGCGgCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 18030 0.69 0.469806
Target:  5'- -cGACGgccaCCCGCUGUCuaaGCCGCUGCa -3'
miRNA:   3'- uaCUGUag--GGGCGGCGG---CGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 18106 0.69 0.458673
Target:  5'- -cGGCAUCUCUGUCGCgGaagaaccuccgggcCCGCCGCg -3'
miRNA:   3'- uaCUGUAGGGGCGGCGgC--------------GGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 18345 0.68 0.529198
Target:  5'- -aGAgAUgCCgGCCacgaggcugcggcgGUCGCUGCCGCCa -3'
miRNA:   3'- uaCUgUAgGGgCGG--------------CGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 18628 0.66 0.615556
Target:  5'- --cACGUuucCCCCGCCuCCGCCaccucuGCCGUCu -3'
miRNA:   3'- uacUGUA---GGGGCGGcGGCGG------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 19295 0.69 0.452736
Target:  5'- gAUGugGgCCaCCGCCGCCGUCGUCcaacCCu -3'
miRNA:   3'- -UACugUaGG-GGCGGCGGCGGCGGc---GG- -5'
15692 5' -64.7 NC_004065.1 + 19556 0.66 0.60991
Target:  5'- gAUGACG--CCCGUCGCCGgacgguccagaucccCCGUCGCg -3'
miRNA:   3'- -UACUGUagGGGCGGCGGC---------------GGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 19867 0.68 0.522852
Target:  5'- aAUGGCGUgcuagagaCCCUGauccaCC-CCGUCGCCGCCg -3'
miRNA:   3'- -UACUGUA--------GGGGC-----GGcGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 20025 0.66 0.624975
Target:  5'- uUGACuccggCUCCGUCGCCcacacccCCGCaCGCCc -3'
miRNA:   3'- uACUGua---GGGGCGGCGGc------GGCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 20980 0.72 0.284262
Target:  5'- -cGugAUCgCCGUCGUCGCCGUCgguGCCg -3'
miRNA:   3'- uaCugUAGgGGCGGCGGCGGCGG---CGG- -5'
15692 5' -64.7 NC_004065.1 + 21138 0.66 0.615556
Target:  5'- -gGAU-UCCCCagcGCCGCgGCCGUgucgcuCGCCu -3'
miRNA:   3'- uaCUGuAGGGG---CGGCGgCGGCG------GCGG- -5'
15692 5' -64.7 NC_004065.1 + 23171 0.7 0.388063
Target:  5'- -aGACGgaaCCGCCGaCCGCCGCCaCUg -3'
miRNA:   3'- uaCUGUaggGGCGGC-GGCGGCGGcGG- -5'
15692 5' -64.7 NC_004065.1 + 24338 0.75 0.193227
Target:  5'- -gGACGUCCUCggcaucaucaucgaGCCGCUcauGCUGCCGCCg -3'
miRNA:   3'- uaCUGUAGGGG--------------CGGCGG---CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 24389 0.69 0.43601
Target:  5'- -cGACGUCgUCGCCcuugacggauggGCCGCCGagGCCg -3'
miRNA:   3'- uaCUGUAGgGGCGG------------CGGCGGCggCGG- -5'
15692 5' -64.7 NC_004065.1 + 24413 0.66 0.624975
Target:  5'- -aGAUGUagaUCuuGCCGCUGCUGCCGaCg -3'
miRNA:   3'- uaCUGUA---GGggCGGCGGCGGCGGCgG- -5'
15692 5' -64.7 NC_004065.1 + 24591 0.85 0.044337
Target:  5'- cGUGuCGUCgCCGCCaCCGCCGCCGCCg -3'
miRNA:   3'- -UACuGUAGgGGCGGcGGCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.