miRNA display CGI


Results 21 - 40 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 24795 0.79 0.107782
Target:  5'- -gGGCucGUCUCCGCUGCCgucgucgcuGCCGCCGCCa -3'
miRNA:   3'- uaCUG--UAGGGGCGGCGG---------CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 25123 0.76 0.165441
Target:  5'- -cGACuuugCCaCCgucgagGCCGCCGUCGCCGCCa -3'
miRNA:   3'- uaCUGua--GG-GG------CGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 25860 0.67 0.550236
Target:  5'- -cGGCAggCCCCaucgagaucgGCCuGCUGCUcaGCCGCCu -3'
miRNA:   3'- uaCUGUa-GGGG----------CGG-CGGCGG--CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 26387 0.67 0.587387
Target:  5'- -gGGCGUUCCCcauGCCcCCGCCuccaacuCCGCCa -3'
miRNA:   3'- uaCUGUAGGGG---CGGcGGCGGc------GGCGG- -5'
15692 5' -64.7 NC_004065.1 + 26615 0.83 0.055509
Target:  5'- ---gUAUCCCCGCCGCCGUCGCCagcGCCg -3'
miRNA:   3'- uacuGUAGGGGCGGCGGCGGCGG---CGG- -5'
15692 5' -64.7 NC_004065.1 + 26688 0.71 0.343712
Target:  5'- cAUGGCuuguaugugCUCUcggagGCCGCCGCCGCCGUg -3'
miRNA:   3'- -UACUGua-------GGGG-----CGGCGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 26883 0.7 0.393476
Target:  5'- -gGACGcugCuCCCGCUGUCGCCGCacuccgacucugucCGCCg -3'
miRNA:   3'- uaCUGUa--G-GGGCGGCGGCGGCG--------------GCGG- -5'
15692 5' -64.7 NC_004065.1 + 27023 0.71 0.336685
Target:  5'- uGUGAaucauaAUCUCCGUCGUCGUCGUCGUCc -3'
miRNA:   3'- -UACUg-----UAGGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 27216 0.76 0.165441
Target:  5'- uUGGCGagCUCCGgagcCCGCCGCgGCCGCCg -3'
miRNA:   3'- uACUGUa-GGGGC----GGCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 27540 0.67 0.568736
Target:  5'- -aGACG-CgUCGUCGgCGgCGCCGCCg -3'
miRNA:   3'- uaCUGUaGgGGCGGCgGCgGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 27645 0.75 0.190143
Target:  5'- -cGACGaUgCCGCCGCUGCUGCUGCUg -3'
miRNA:   3'- uaCUGUaGgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 27749 0.78 0.132826
Target:  5'- cUGAUGaCCCCGCCGCgcaucgagacgcugCGCCGCCGUCu -3'
miRNA:   3'- uACUGUaGGGGCGGCG--------------GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 28338 0.68 0.531925
Target:  5'- -gGGCcuGUCCgCGUugUGCCGCCGCaGCCu -3'
miRNA:   3'- uaCUG--UAGGgGCG--GCGGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 28509 0.69 0.443493
Target:  5'- -aGACAUCuUCCGcCCGCUGCCugacgagaguagcGCcCGCCg -3'
miRNA:   3'- uaCUGUAG-GGGC-GGCGGCGG-------------CG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 29498 0.67 0.577113
Target:  5'- -aGGCGUUCCagguacucggugaCGCCGgCGCUGCaGCCg -3'
miRNA:   3'- uaCUGUAGGG-------------GCGGCgGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 30189 0.74 0.243869
Target:  5'- --aACAUCCCCGaaGCCGUCGUagCGCCu -3'
miRNA:   3'- uacUGUAGGGGCggCGGCGGCG--GCGG- -5'
15692 5' -64.7 NC_004065.1 + 30234 0.87 0.031983
Target:  5'- -cGAUA-CCaCUGCCGCCGCCGCCGCCg -3'
miRNA:   3'- uaCUGUaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 30331 0.72 0.303129
Target:  5'- cUGGCcucgcuUCCaCCGCCGCCaucaacgauaacGCUGCCGCUg -3'
miRNA:   3'- uACUGu-----AGG-GGCGGCGG------------CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 31153 0.7 0.380415
Target:  5'- -gGGCAUCgacaCCGCCGCgGCCGgaGCUa -3'
miRNA:   3'- uaCUGUAGg---GGCGGCGgCGGCggCGG- -5'
15692 5' -64.7 NC_004065.1 + 31359 0.7 0.375874
Target:  5'- -gGugGUgCCUGCCcgcuccacccuggcgGCCaagGCCGCCGCCa -3'
miRNA:   3'- uaCugUAgGGGCGG---------------CGG---CGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.