miRNA display CGI


Results 61 - 80 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 44283 0.66 0.643819
Target:  5'- cAUGugGgCCCgGUCGauCCGCCugcuguGCCGCCu -3'
miRNA:   3'- -UACugUaGGGgCGGC--GGCGG------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 44788 0.66 0.612732
Target:  5'- -aGGCAgCgCCGCCaCCGUccccgguaacaucgCGCCGCCg -3'
miRNA:   3'- uaCUGUaGgGGCGGcGGCG--------------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 44924 0.66 0.596757
Target:  5'- -cGACcaucgCUUCGUCGCCGacgaCGCCGUCg -3'
miRNA:   3'- uaCUGua---GGGGCGGCGGCg---GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 45191 0.8 0.090921
Target:  5'- -cGACAggggCaacaCGCCGCCGCUGCCGCCa -3'
miRNA:   3'- uaCUGUa---Ggg--GCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 45379 0.68 0.531925
Target:  5'- -gGACgaGUCCgacgagUCGCCuUCGCCGCCGCUg -3'
miRNA:   3'- uaCUG--UAGG------GGCGGcGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 45796 0.78 0.133779
Target:  5'- -gGGCggCUgCCGCCGCCGCCGCggCGCCg -3'
miRNA:   3'- uaCUGuaGG-GGCGGCGGCGGCG--GCGG- -5'
15692 5' -64.7 NC_004065.1 + 47368 0.66 0.596757
Target:  5'- -aGACcguacuccacaGUCCagCGCgGCCGCCGUCGgCa -3'
miRNA:   3'- uaCUG-----------UAGGg-GCGgCGGCGGCGGCgG- -5'
15692 5' -64.7 NC_004065.1 + 48367 0.83 0.056907
Target:  5'- -cGAgGUCCcaCCGCCGCCGCCaccGCCGCCg -3'
miRNA:   3'- uaCUgUAGG--GGCGGCGGCGG---CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 48626 0.7 0.395811
Target:  5'- uUGACAUCUUCGCCGUgGUCggauacaagGCCGCg -3'
miRNA:   3'- uACUGUAGGGGCGGCGgCGG---------CGGCGg -5'
15692 5' -64.7 NC_004065.1 + 48727 0.72 0.322946
Target:  5'- -cGACGUCCUCGuguCCGUCGUagcaguagaUGCCGCCg -3'
miRNA:   3'- uaCUGUAGGGGC---GGCGGCG---------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 48905 0.76 0.173337
Target:  5'- -----cUCCCCGCCGCCGCCaccCCGUCa -3'
miRNA:   3'- uacuguAGGGGCGGCGGCGGc--GGCGG- -5'
15692 5' -64.7 NC_004065.1 + 51503 0.68 0.522852
Target:  5'- cAUGAC-UCCCCuGUCGUaggccaugacgaCGCCGUCGCg -3'
miRNA:   3'- -UACUGuAGGGG-CGGCG------------GCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 52542 0.78 0.118694
Target:  5'- -cGGCggCCCCGCCGUgCGCCcCCGCCg -3'
miRNA:   3'- uaCUGuaGGGGCGGCG-GCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 54088 0.67 0.568736
Target:  5'- -cGGCAgagCCagagccauauaCGCCGCCGUcauCGCCGCg -3'
miRNA:   3'- uaCUGUa--GGg----------GCGGCGGCG---GCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 54642 0.67 0.559465
Target:  5'- -gGGgAUCgUCGuCCGCCuGCUGCCGCa -3'
miRNA:   3'- uaCUgUAGgGGC-GGCGG-CGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 55372 0.69 0.452736
Target:  5'- -aGAUaacuGUCUCggCGCCGCCGCgGgCGCCa -3'
miRNA:   3'- uaCUG----UAGGG--GCGGCGGCGgCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 56703 0.68 0.522852
Target:  5'- -cGACucuUCUCCGCCGCaGCgGCgGCg -3'
miRNA:   3'- uaCUGu--AGGGGCGGCGgCGgCGgCGg -5'
15692 5' -64.7 NC_004065.1 + 56868 0.68 0.50489
Target:  5'- --cGCAUCCacauCCGCgGCCGCCuGCuCGCUc -3'
miRNA:   3'- uacUGUAGG----GGCGgCGGCGG-CG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 56899 0.67 0.550236
Target:  5'- -cGACGgugaagggUGCCGCgGCCGCUGCCa -3'
miRNA:   3'- uaCUGUaggg----GCGGCGgCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 56977 0.85 0.038143
Target:  5'- -aGACAgCUgCUGCCGCCGCCGCCGCCg -3'
miRNA:   3'- uaCUGUaGG-GGCGGCGGCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.