miRNA display CGI


Results 81 - 100 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 57758 0.81 0.082443
Target:  5'- -aGAgAUCgUCGUCGCCGCCGCCGUCg -3'
miRNA:   3'- uaCUgUAGgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 58008 0.75 0.190143
Target:  5'- uUGuuAUCUuuGCCGCUuCCGCCGCCa -3'
miRNA:   3'- uACugUAGGggCGGCGGcGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 58057 0.91 0.014219
Target:  5'- -cGACccCUCCGCCGCCGCCGCCGCCa -3'
miRNA:   3'- uaCUGuaGGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 58407 0.66 0.634398
Target:  5'- --aGCAgCUCCGCCGgCGacgauuUCGCCGCCu -3'
miRNA:   3'- uacUGUaGGGGCGGCgGC------GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 58869 0.7 0.417223
Target:  5'- -cGGCGaCUCCGCCGCgCGCgucgaucucgacucCGCCGUCg -3'
miRNA:   3'- uaCUGUaGGGGCGGCG-GCG--------------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 59971 0.72 0.322946
Target:  5'- -cGACgGUCgCCGUgCGCCGCgGCCGCUc -3'
miRNA:   3'- uaCUG-UAGgGGCG-GCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 60803 0.66 0.606148
Target:  5'- -cGGCGUCUCCGUCGUCuCCGgCGgCu -3'
miRNA:   3'- uaCUGUAGGGGCGGCGGcGGCgGCgG- -5'
15692 5' -64.7 NC_004065.1 + 61847 0.66 0.606148
Target:  5'- -aGGCGUCg-CGCCGCUGUCG-CGCCc -3'
miRNA:   3'- uaCUGUAGggGCGGCGGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 62344 0.82 0.066043
Target:  5'- -cGACcgCCgCUGCCGCUGCCGUCGCCc -3'
miRNA:   3'- uaCUGuaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 62578 0.74 0.238505
Target:  5'- aGUGACAgcagcagCCaguagguuagCGCCGCCGCCcCCGCCg -3'
miRNA:   3'- -UACUGUa------GGg---------GCGGCGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 62636 0.78 0.130627
Target:  5'- -cGcCAcCCCCGCCGCCaccaccCCGCCGCCa -3'
miRNA:   3'- uaCuGUaGGGGCGGCGGc-----GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 62676 0.68 0.513839
Target:  5'- -cGGCGaCCCUGuCUGCCGCCGCguugguCGCg -3'
miRNA:   3'- uaCUGUaGGGGC-GGCGGCGGCG------GCGg -5'
15692 5' -64.7 NC_004065.1 + 62721 0.71 0.336685
Target:  5'- -cGGCcgCuCCUGCCGUCGCCGgUGCUu -3'
miRNA:   3'- uaCUGuaG-GGGCGGCGGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 62875 0.68 0.522852
Target:  5'- aAUG-CugcUgCCGCgGCUGCUGCCGCCg -3'
miRNA:   3'- -UACuGua-GgGGCGgCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 62918 0.78 0.121578
Target:  5'- -aGACAgggUCgCCGCUGCCGucuCCGCCGCCa -3'
miRNA:   3'- uaCUGU---AGgGGCGGCGGC---GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 63468 0.67 0.541055
Target:  5'- -gGACGaCCCggugcaGCCGCCaGgCGCCGUCg -3'
miRNA:   3'- uaCUGUaGGGg-----CGGCGG-CgGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 63514 0.68 0.50489
Target:  5'- gAUGGCcucgCCCuCGCgGCCGUagauCGCCGCg -3'
miRNA:   3'- -UACUGua--GGG-GCGgCGGCG----GCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 63807 0.67 0.578045
Target:  5'- -aGaACGUCUCCGCCGCCaccaagaacacGCuCGCgGCg -3'
miRNA:   3'- uaC-UGUAGGGGCGGCGG-----------CG-GCGgCGg -5'
15692 5' -64.7 NC_004065.1 + 64138 0.66 0.596757
Target:  5'- -gGGCuucUCCUC-CCGCUgGCCGCCGaCCu -3'
miRNA:   3'- uaCUGu--AGGGGcGGCGG-CGGCGGC-GG- -5'
15692 5' -64.7 NC_004065.1 + 64467 0.76 0.161237
Target:  5'- ----uGUCCUCGCCGCCGacacugccuccgcCCGCCGCCu -3'
miRNA:   3'- uacugUAGGGGCGGCGGC-------------GGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.