miRNA display CGI


Results 101 - 120 of 374 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 64807 0.66 0.634398
Target:  5'- gAUGACcgcGUCCagcugugugUCGCCGUCG-CGCCGCa -3'
miRNA:   3'- -UACUG---UAGG---------GGCGGCGGCgGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 65161 0.68 0.486322
Target:  5'- -cGGCGUCCCgcccggcgacuggCGCCGCucuucuccgaCGCgCGCCGCg -3'
miRNA:   3'- uaCUGUAGGG-------------GCGGCG----------GCG-GCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 65255 0.68 0.50489
Target:  5'- cAUGAUcUCCCUGCaCGCCacguaccgcacgGCCGCgGCg -3'
miRNA:   3'- -UACUGuAGGGGCG-GCGG------------CGGCGgCGg -5'
15692 5' -64.7 NC_004065.1 + 65566 0.67 0.586452
Target:  5'- gAUGugGUCCgCCGCCucgcugaacucGUcgaugcuucuggaCGCCGCgGCCg -3'
miRNA:   3'- -UACugUAGG-GGCGG-----------CG-------------GCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 65643 0.87 0.02749
Target:  5'- cUGACGgaCCCGCUGCCGCUGCCGCCg -3'
miRNA:   3'- uACUGUagGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 66771 0.69 0.444329
Target:  5'- -aGGCG-CCggCGCCGCCGCUG-CGCCg -3'
miRNA:   3'- uaCUGUaGGg-GCGGCGGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 67527 0.67 0.578045
Target:  5'- --uGCGUCUCCGCCguGCCGUUgaacgGCCGCg -3'
miRNA:   3'- uacUGUAGGGGCGG--CGGCGG-----CGGCGg -5'
15692 5' -64.7 NC_004065.1 + 67932 0.88 0.026804
Target:  5'- gAUGGagggCCCGCCGCCGCCGCCGCCg -3'
miRNA:   3'- -UACUguagGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 68020 0.66 0.634398
Target:  5'- -gGGCG-CCCgCGCCGuUCGUcaCGCCGUCg -3'
miRNA:   3'- uaCUGUaGGG-GCGGC-GGCG--GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 68424 0.76 0.181568
Target:  5'- -cGACAgCUCCGUCGCgcgCGCCGCCGCg -3'
miRNA:   3'- uaCUGUaGGGGCGGCG---GCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 68838 0.73 0.278182
Target:  5'- -cGGCGcUCUggaUCGCCGCCGCCGCguugcuCGCCa -3'
miRNA:   3'- uaCUGU-AGG---GGCGGCGGCGGCG------GCGG- -5'
15692 5' -64.7 NC_004065.1 + 69043 0.69 0.444329
Target:  5'- --aGCAg-CCCGCCGCCGCCGgagaUGCUg -3'
miRNA:   3'- uacUGUagGGGCGGCGGCGGCg---GCGG- -5'
15692 5' -64.7 NC_004065.1 + 69655 0.68 0.522852
Target:  5'- cUGGCG-CCCCGUCGgCaGCUGuuCCGCCa -3'
miRNA:   3'- uACUGUaGGGGCGGCgG-CGGC--GGCGG- -5'
15692 5' -64.7 NC_004065.1 + 70023 0.68 0.522852
Target:  5'- cUGAacUCCCUGCUGgCGUCGCuCGUCa -3'
miRNA:   3'- uACUguAGGGGCGGCgGCGGCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 70371 0.83 0.059808
Target:  5'- -cGAUcggCgCCGCCGCCGCCGCUGCCg -3'
miRNA:   3'- uaCUGua-GgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 71942 0.79 0.107782
Target:  5'- -gGACGcgccgCuCCCGuuGCCGCCGCCGCUg -3'
miRNA:   3'- uaCUGUa----G-GGGCggCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 73687 0.7 0.419646
Target:  5'- -----uUUCuuGCUGCUGCCGCCGCUu -3'
miRNA:   3'- uacuguAGGggCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 73713 0.73 0.254899
Target:  5'- -----cUCCuCCGCCGCCGCUGCuggCGCCa -3'
miRNA:   3'- uacuguAGG-GGCGGCGGCGGCG---GCGG- -5'
15692 5' -64.7 NC_004065.1 + 74610 0.71 0.329762
Target:  5'- gGUGGCggccgaGUUCCCGgaaCCGCCGCCaCCGCUa -3'
miRNA:   3'- -UACUG------UAGGGGC---GGCGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 74654 0.67 0.568736
Target:  5'- cUGAgGUCCggaCCGCgGCgCGuCCGCCGUa -3'
miRNA:   3'- uACUgUAGG---GGCGgCG-GC-GGCGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.