miRNA display CGI


Results 121 - 140 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 75118 0.68 0.477595
Target:  5'- -cGACcUgCCCGucuaccaCCGCCGCCucaaccugcGCCGCCu -3'
miRNA:   3'- uaCUGuAgGGGC-------GGCGGCGG---------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 75579 0.68 0.513839
Target:  5'- cGUGACGUUCgUGUCGCCGgCggggggagGCCGCUg -3'
miRNA:   3'- -UACUGUAGGgGCGGCGGCgG--------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 75735 0.76 0.17741
Target:  5'- cUGA--UCCUCGCCGCCGCCaUCGCCc -3'
miRNA:   3'- uACUguAGGGGCGGCGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 75840 0.7 0.414809
Target:  5'- -cGGCcUCCCC-CCGCCGgCgacacgaacgucacgGCCGCCg -3'
miRNA:   3'- uaCUGuAGGGGcGGCGGCgG---------------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 75929 0.66 0.606148
Target:  5'- -cGGCcaagaAUCagCCCGCgGCCGCC-UCGCCg -3'
miRNA:   3'- uaCUG-----UAG--GGGCGgCGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 76056 0.76 0.160483
Target:  5'- cGUGcCAggugCCUCGCCGCCGCucccccucgccgacCGCCGCCu -3'
miRNA:   3'- -UACuGUa---GGGGCGGCGGCG--------------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 76366 0.72 0.290446
Target:  5'- -cGAUcUCCaucgCGCCGgCGCCGCCGCg -3'
miRNA:   3'- uaCUGuAGGg---GCGGCgGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 76393 0.71 0.336685
Target:  5'- -gGAUGagCUCGCCGCCGUccgaguggCGCCGCCc -3'
miRNA:   3'- uaCUGUagGGGCGGCGGCG--------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 76768 0.67 0.550236
Target:  5'- -cGuCAUCgUCCGgCGCauCGCCGCCGCg -3'
miRNA:   3'- uaCuGUAG-GGGCgGCG--GCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 77003 0.68 0.496009
Target:  5'- gAUGACGaggCCGCCGgCGCCG-CGCCc -3'
miRNA:   3'- -UACUGUaggGGCGGCgGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 77463 0.66 0.606148
Target:  5'- cGUGGcCAUCgCCGUgcggGgCGCCGCCGCg -3'
miRNA:   3'- -UACU-GUAGgGGCGg---CgGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 77961 0.71 0.358082
Target:  5'- cGUGACGUcgagCCCCgagacgcugGCCGCgGCgaGCCGCCc -3'
miRNA:   3'- -UACUGUA----GGGG---------CGGCGgCGg-CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 78240 0.67 0.587387
Target:  5'- ---cCGUCCCgggGCgGCuCGCCGCgGCCa -3'
miRNA:   3'- uacuGUAGGGg--CGgCG-GCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 78469 0.7 0.411604
Target:  5'- gAUGAUGUCUCCG-CGCCGCgucaaGCgCGCCc -3'
miRNA:   3'- -UACUGUAGGGGCgGCGGCGg----CG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 78536 0.69 0.46123
Target:  5'- cUGAgGagCCCGuCCGCgUGCCGCUGCUc -3'
miRNA:   3'- uACUgUagGGGC-GGCG-GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 78627 0.7 0.387293
Target:  5'- -cGACcgaCCCGCCuCCGCCacccaagagaucgGCCGCCa -3'
miRNA:   3'- uaCUGuagGGGCGGcGGCGG-------------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 78854 0.74 0.232718
Target:  5'- -gGugGUCgaccucuuuucugCCCGCCGUCGCUGuuGCCa -3'
miRNA:   3'- uaCugUAG-------------GGGCGGCGGCGGCggCGG- -5'
15692 5' -64.7 NC_004065.1 + 78920 0.67 0.587387
Target:  5'- -gGGCG-CCgCGgCGCCgGCCGCUGCg -3'
miRNA:   3'- uaCUGUaGGgGCgGCGG-CGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 79680 0.69 0.452736
Target:  5'- ---cUAUCCCCcCCGUCGCUGUCGUCc -3'
miRNA:   3'- uacuGUAGGGGcGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 80414 0.68 0.487199
Target:  5'- uGUGAguUCgggCCCGUCGUCaGCCGCCucuGCCg -3'
miRNA:   3'- -UACUguAG---GGGCGGCGG-CGGCGG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.