miRNA display CGI


Results 1 - 20 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 229912 0.69 0.427781
Target:  5'- -cGACGcccaCCUGCCaCUGCCGCCgGCCg -3'
miRNA:   3'- uaCUGUag--GGGCGGcGGCGGCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 225651 0.81 0.082443
Target:  5'- -cGGC--UCCCGCCGCCGCCGUCGCg -3'
miRNA:   3'- uaCUGuaGGGGCGGCGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 225611 0.68 0.522852
Target:  5'- --aGCGUCaggCCCGCCGUgGCCaCCGCUc -3'
miRNA:   3'- uacUGUAG---GGGCGGCGgCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 223478 0.67 0.550236
Target:  5'- -aGAagaCCgCGUCGCCGCUaCCGCCg -3'
miRNA:   3'- uaCUguaGGgGCGGCGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 223281 0.67 0.559465
Target:  5'- -gGACcgaCCCGagUGCCGCCGCgGCUa -3'
miRNA:   3'- uaCUGuagGGGCg-GCGGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 223111 0.68 0.513839
Target:  5'- -aGGcCGUgCCCGCaGCUGaaGCCGCCg -3'
miRNA:   3'- uaCU-GUAgGGGCGgCGGCggCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 221267 0.72 0.296735
Target:  5'- -gGAUAUgaaCCCUGCCGCCGCCaCCacgGCCu -3'
miRNA:   3'- uaCUGUA---GGGGCGGCGGCGGcGG---CGG- -5'
15692 5' -64.7 NC_004065.1 + 211084 0.67 0.550236
Target:  5'- -cGcACGUCCauauaGCUGCUGcCCGCCGUCu -3'
miRNA:   3'- uaC-UGUAGGgg---CGGCGGC-GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 209662 0.68 0.50489
Target:  5'- cAUGAag-CCCgGCCGUCGaCGCCGUa -3'
miRNA:   3'- -UACUguaGGGgCGGCGGCgGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 207956 0.66 0.634398
Target:  5'- uUGACGaCCCCGUCGCaCGaCGagGCCa -3'
miRNA:   3'- uACUGUaGGGGCGGCG-GCgGCggCGG- -5'
15692 5' -64.7 NC_004065.1 + 207637 0.67 0.587387
Target:  5'- -gGACAgcUCCauGCCGCaCGCgGCCGgCu -3'
miRNA:   3'- uaCUGU--AGGggCGGCG-GCGgCGGCgG- -5'
15692 5' -64.7 NC_004065.1 + 201360 0.7 0.406825
Target:  5'- -gGACAUcgugCCucgguucaaggaaagCCGCCGCCuCCGUCGCCg -3'
miRNA:   3'- uaCUGUA----GG---------------GGCGGCGGcGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 201077 0.66 0.634398
Target:  5'- -gGuCGUCCCCGUCGCC-CCGUCc-- -3'
miRNA:   3'- uaCuGUAGGGGCGGCGGcGGCGGcgg -5'
15692 5' -64.7 NC_004065.1 + 201055 0.73 0.27758
Target:  5'- ----gAUCCCCGCgccgagaCGCCGUCGCcCGCCa -3'
miRNA:   3'- uacugUAGGGGCG-------GCGGCGGCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 201033 0.72 0.290446
Target:  5'- -cGGCG-CCUCGCCaCCGCCGCCGg- -3'
miRNA:   3'- uaCUGUaGGGGCGGcGGCGGCGGCgg -5'
15692 5' -64.7 NC_004065.1 + 200806 0.76 0.17741
Target:  5'- ----uGUUCCCGCUGCCGcCCGUCGCCc -3'
miRNA:   3'- uacugUAGGGGCGGCGGC-GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 199778 0.68 0.531925
Target:  5'- -aGGCG-CCCgGCUGCgCGCacguggcgGCCGCCg -3'
miRNA:   3'- uaCUGUaGGGgCGGCG-GCGg-------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 198386 0.68 0.531925
Target:  5'- -cGACGUCCCguaGcCCGgCGUCGUCaGCCg -3'
miRNA:   3'- uaCUGUAGGGg--C-GGCgGCGGCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 197704 0.84 0.046613
Target:  5'- -cGACGUCCgaCGCCGUCGCgGCCGCCg -3'
miRNA:   3'- uaCUGUAGGg-GCGGCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 197673 0.69 0.46123
Target:  5'- -gGAC--CCUCGCCGuaCCGaCCGCCGCUc -3'
miRNA:   3'- uaCUGuaGGGGCGGC--GGC-GGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.