miRNA display CGI


Results 21 - 40 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 197413 0.68 0.496009
Target:  5'- cUGGCGUCCCUggucgagagGCgCGCCGgcgagcguCUGCCGCUg -3'
miRNA:   3'- uACUGUAGGGG---------CG-GCGGC--------GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 197362 0.66 0.643819
Target:  5'- -gGGCcgauUCUCCGCCGCgGgCCGUgGCg -3'
miRNA:   3'- uaCUGu---AGGGGCGGCGgC-GGCGgCGg -5'
15692 5' -64.7 NC_004065.1 + 195422 0.71 0.343712
Target:  5'- -cGuACGcUCCCGCCGCguCGCCGUCGUCg -3'
miRNA:   3'- uaC-UGUaGGGGCGGCG--GCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 195346 0.66 0.634398
Target:  5'- cUGACGcCCCUGggggucugCGCCGCgCGCuCGCCc -3'
miRNA:   3'- uACUGUaGGGGCg-------GCGGCG-GCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 195108 0.68 0.487199
Target:  5'- -gGGCGUCagCUCGCCGgCGgUGUCGCCg -3'
miRNA:   3'- uaCUGUAG--GGGCGGCgGCgGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 195105 0.7 0.419646
Target:  5'- -aGAuCGUgUCCGCCGCCGUgGUCgGCCu -3'
miRNA:   3'- uaCU-GUAgGGGCGGCGGCGgCGG-CGG- -5'
15692 5' -64.7 NC_004065.1 + 193374 0.67 0.559465
Target:  5'- -gGACAaagUCUCUGCUucuGCCGCC-CUGCCu -3'
miRNA:   3'- uaCUGU---AGGGGCGG---CGGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 190832 0.71 0.341593
Target:  5'- -cGACA-CCgUGCgcgagaaauaaccaCGCCGCCGCCGUCg -3'
miRNA:   3'- uaCUGUaGGgGCG--------------GCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 190148 0.66 0.634398
Target:  5'- gGUGGCgAUCUCCG-CGCuCGUgagaCGCUGCCg -3'
miRNA:   3'- -UACUG-UAGGGGCgGCG-GCG----GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 190031 0.68 0.50489
Target:  5'- -cGACAUCCCC-CCgggguuucuggGgCGCC-CCGCCg -3'
miRNA:   3'- uaCUGUAGGGGcGG-----------CgGCGGcGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 189851 0.66 0.615556
Target:  5'- -gGACcUgCUCGUCGCCGCgagggguuUGCUGCCg -3'
miRNA:   3'- uaCUGuAgGGGCGGCGGCG--------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 189004 0.69 0.443493
Target:  5'- -cGAUcgCCCUGgugggcuUCGCCGCCGUgCGCCu -3'
miRNA:   3'- uaCUGuaGGGGC-------GGCGGCGGCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 188884 0.66 0.606148
Target:  5'- uGUGguACGUgCUCGCCGCCGgCgacacgGUCGCCg -3'
miRNA:   3'- -UAC--UGUAgGGGCGGCGGCgG------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 185124 0.69 0.427781
Target:  5'- ---uCGUUCCCGgCGUC-CCGCCGCCc -3'
miRNA:   3'- uacuGUAGGGGCgGCGGcGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 178985 0.68 0.520142
Target:  5'- --cACAccUCCCUcugcgaagagguauGCCGCCGCUGCCcCCa -3'
miRNA:   3'- uacUGU--AGGGG--------------CGGCGGCGGCGGcGG- -5'
15692 5' -64.7 NC_004065.1 + 176446 0.71 0.365423
Target:  5'- -aGAC-UCUgaaacagcugCCuCCGCCGCCGUCGCCa -3'
miRNA:   3'- uaCUGuAGG----------GGcGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 176078 0.65 0.652292
Target:  5'- uUGuuGUUgCUGCUGCCucgagaaGCCGCCGCa -3'
miRNA:   3'- uACugUAGgGGCGGCGG-------CGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 175509 0.67 0.587387
Target:  5'- -aGACAgaaCgCGuCCGCCGaaagaguaaCGCCGCCa -3'
miRNA:   3'- uaCUGUag-GgGC-GGCGGCg--------GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 174848 0.67 0.587387
Target:  5'- gGUGGCGugcuUCCuaGCggggGUCGCCGCCGCg -3'
miRNA:   3'- -UACUGU----AGGggCGg---CGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 173872 0.72 0.290446
Target:  5'- -aGGCG-CCgucaCGCCguguguguggGCCGCCGCCGCCu -3'
miRNA:   3'- uaCUGUaGGg---GCGG----------CGGCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.