miRNA display CGI


Results 41 - 60 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 172881 0.66 0.624975
Target:  5'- -cGGCAgauUCCgUGCCGUCGCCGUgauCGUUg -3'
miRNA:   3'- uaCUGU---AGGgGCGGCGGCGGCG---GCGG- -5'
15692 5' -64.7 NC_004065.1 + 172336 0.66 0.624975
Target:  5'- --uACGUcCCCCGCuCGaaCCGCgGCgGCCa -3'
miRNA:   3'- uacUGUA-GGGGCG-GC--GGCGgCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 172069 0.66 0.596757
Target:  5'- ----gGUCCuCCGUgGCCGCCGCgGUUc -3'
miRNA:   3'- uacugUAGG-GGCGgCGGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 171253 0.66 0.642877
Target:  5'- cGUGACcUUCCaCGUCGCCucuuuccaaucggGcCCGCCGUCu -3'
miRNA:   3'- -UACUGuAGGG-GCGGCGG-------------C-GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 170683 0.68 0.50489
Target:  5'- -cGGCGUCCuUCGUCGauCCGCCGCaGCUa -3'
miRNA:   3'- uaCUGUAGG-GGCGGC--GGCGGCGgCGG- -5'
15692 5' -64.7 NC_004065.1 + 170459 0.7 0.395811
Target:  5'- -aGGCGcCUUCGCUGCCGCCGCagacCGCUc -3'
miRNA:   3'- uaCUGUaGGGGCGGCGGCGGCG----GCGG- -5'
15692 5' -64.7 NC_004065.1 + 170249 0.75 0.194563
Target:  5'- -cGGUAUCguggCCGUgGCCGCCGCCGCCa -3'
miRNA:   3'- uaCUGUAGg---GGCGgCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 169849 0.67 0.568736
Target:  5'- cGUGACGgcCCCCGCgaaccgGCCGgaGCCGCg -3'
miRNA:   3'- -UACUGUa-GGGGCGg-----CGGCggCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 169545 0.67 0.55854
Target:  5'- -aGACG-CCgCCGCCGUcucgguuucugcgCGCUGuuGCCg -3'
miRNA:   3'- uaCUGUaGG-GGCGGCG-------------GCGGCggCGG- -5'
15692 5' -64.7 NC_004065.1 + 168818 0.85 0.040007
Target:  5'- -aGACGcccgcugUCgCCGCCGCCGCCGCUGCCa -3'
miRNA:   3'- uaCUGU-------AGgGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 166934 0.69 0.444329
Target:  5'- gGUGAgGUCcaacgCCCGUCGCuCGCCGgCGaCCg -3'
miRNA:   3'- -UACUgUAG-----GGGCGGCG-GCGGCgGC-GG- -5'
15692 5' -64.7 NC_004065.1 + 166407 0.8 0.086583
Target:  5'- -aGACGUCggcgCCGCUGCCGCCGgCGCCg -3'
miRNA:   3'- uaCUGUAGg---GGCGGCGGCGGCgGCGG- -5'
15692 5' -64.7 NC_004065.1 + 166101 0.66 0.634398
Target:  5'- -aGACcgUCCgGCC-CCGCCGUC-CCu -3'
miRNA:   3'- uaCUGuaGGGgCGGcGGCGGCGGcGG- -5'
15692 5' -64.7 NC_004065.1 + 164829 0.68 0.487199
Target:  5'- gGUGGC-UCUggagcgcgaagCgGUCGgCGCCGCCGCCg -3'
miRNA:   3'- -UACUGuAGG-----------GgCGGCgGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 164686 0.81 0.080444
Target:  5'- -cGACccaCCCgcagcugcUGCCGCCGCCGCCGCCg -3'
miRNA:   3'- uaCUGua-GGG--------GCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 163901 0.81 0.072903
Target:  5'- --uGCcUCCgCUGCCGCUGCCGCCGCCg -3'
miRNA:   3'- uacUGuAGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 163761 0.73 0.259995
Target:  5'- -cGACGUUCUUccgaagaauugaaGCCGCCGCCaccggcGCCGCCg -3'
miRNA:   3'- uaCUGUAGGGG-------------CGGCGGCGG------CGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 163425 0.76 0.17741
Target:  5'- -cGGCAaCgCCGCgGUgGCCGCCGCCg -3'
miRNA:   3'- uaCUGUaGgGGCGgCGgCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 163423 0.71 0.341593
Target:  5'- cAUG-CAUCCCUgGCCGCCgauccggacgacgaGCCGCUGUCc -3'
miRNA:   3'- -UACuGUAGGGG-CGGCGG--------------CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 162738 0.66 0.624975
Target:  5'- aGUGGCGcUCCUCGUCcugGCCgGCCGCgcgaggccuuCGCCg -3'
miRNA:   3'- -UACUGU-AGGGGCGG---CGG-CGGCG----------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.