miRNA display CGI


Results 61 - 80 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15692 5' -64.7 NC_004065.1 + 162089 0.69 0.469806
Target:  5'- -cGAaccCGUCCCCGuCCGcCCGCCcGuCCGUCc -3'
miRNA:   3'- uaCU---GUAGGGGC-GGC-GGCGG-C-GGCGG- -5'
15692 5' -64.7 NC_004065.1 + 161488 0.69 0.43601
Target:  5'- -cGuCAcCUCCGCCGCCGCCuCCucgGCCu -3'
miRNA:   3'- uaCuGUaGGGGCGGCGGCGGcGG---CGG- -5'
15692 5' -64.7 NC_004065.1 + 161282 0.67 0.559465
Target:  5'- -cGACcggCCCCuGCaCGUCGauGCCGCCu -3'
miRNA:   3'- uaCUGua-GGGG-CG-GCGGCggCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 159687 0.9 0.017424
Target:  5'- -aGGCGcUCCUCGCCGCCGUCGCCGCCg -3'
miRNA:   3'- uaCUGU-AGGGGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 154413 0.87 0.02749
Target:  5'- --aACAgCCgCCGCCGCCGCCGCCGCCa -3'
miRNA:   3'- uacUGUaGG-GGCGGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 154273 0.85 0.038143
Target:  5'- gAUGACAaCgUCGCCGCCGCCGCCGCg -3'
miRNA:   3'- -UACUGUaGgGGCGGCGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 153964 0.7 0.380415
Target:  5'- -cGACuuGUCUgCGCCGUCGCgGUCGUCg -3'
miRNA:   3'- uaCUG--UAGGgGCGGCGGCGgCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 153192 0.67 0.578045
Target:  5'- -gGAgAUCUCCucgucgauuuGCCGCgGCggcagCGCCGCCg -3'
miRNA:   3'- uaCUgUAGGGG----------CGGCGgCG-----GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 152923 0.74 0.228072
Target:  5'- ----uGUCCCuCG-CGCCGUCGCCGCCg -3'
miRNA:   3'- uacugUAGGG-GCgGCGGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 152916 0.69 0.427781
Target:  5'- -cGAUGUCggCGgCGCUGCCGCCGCg -3'
miRNA:   3'- uaCUGUAGggGCgGCGGCGGCGGCGg -5'
15692 5' -64.7 NC_004065.1 + 152566 0.87 0.031187
Target:  5'- -cGucauCGUCCCCGCCGgcaCCGCCGCCGCCg -3'
miRNA:   3'- uaCu---GUAGGGGCGGC---GGCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 152033 0.67 0.578045
Target:  5'- -gGACGUCCauGCCG-CGCUGCaCGUCc -3'
miRNA:   3'- uaCUGUAGGggCGGCgGCGGCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 151967 0.68 0.484571
Target:  5'- -cGACAgguucgugcgCCCCGCCGgccucaucagggacCCGgCGCaCGCCa -3'
miRNA:   3'- uaCUGUa---------GGGGCGGC--------------GGCgGCG-GCGG- -5'
15692 5' -64.7 NC_004065.1 + 151793 0.69 0.469806
Target:  5'- -cGGUGUCCuuGCgGCCcuuGCCGCCGUCc -3'
miRNA:   3'- uaCUGUAGGggCGgCGG---CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 151688 0.68 0.487199
Target:  5'- -cGACGUCgCCGUcgaacgcgaCGUCGUcgCGCCGCCu -3'
miRNA:   3'- uaCUGUAGgGGCG---------GCGGCG--GCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 151380 0.79 0.102686
Target:  5'- -cGGCGUUgCCGCCGCCuucGCUGCUGCCg -3'
miRNA:   3'- uaCUGUAGgGGCGGCGG---CGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 151175 0.76 0.181568
Target:  5'- -cGACAa-CCCGCCGgaGCCGCCGUCg -3'
miRNA:   3'- uaCUGUagGGGCGGCggCGGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 150695 0.71 0.350845
Target:  5'- ---uCGUCUCCGCgCGCaCGaaCCGCCGCCg -3'
miRNA:   3'- uacuGUAGGGGCG-GCG-GC--GGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 149622 0.69 0.43601
Target:  5'- uUGuCGUCCaCCGUCaCCGgCGCCGUCg -3'
miRNA:   3'- uACuGUAGG-GGCGGcGGCgGCGGCGG- -5'
15692 5' -64.7 NC_004065.1 + 149318 0.79 0.107782
Target:  5'- -cGACGaCCCCgaucggccuGCCGCCGCCGUCGUCg -3'
miRNA:   3'- uaCUGUaGGGG---------CGGCGGCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.